Strain Fitness in Shewanella loihica PV-4 around Shew_2638

Experiment: Spectinomycin 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2637 and dapD are separated by 35 nucleotidesdapD and Shew_2639 are separated by 210 nucleotidesShew_2639 and purU are separated by 108 nucleotides Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128 _2637 Shew_2638: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq), at 3,114,164 to 3,114,988 dapD Shew_2639: Shew_2639 - hypothetical protein (RefSeq), at 3,115,199 to 3,115,543 _2639 Shew_2640: purU - formyltetrahydrofolate deformylase (RefSeq), at 3,115,652 to 3,116,485 purU Position (kb) 3114 3115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3113.164 kb on + strand, within Shew_2637at 3113.283 kb on - strand, within Shew_2637at 3113.384 kb on - strand, within Shew_2637at 3113.597 kb on + strand, within Shew_2637at 3115.421 kb on + strand, within Shew_2639at 3115.652 kb on - strandat 3115.713 kb on + strandat 3115.721 kb on - strandat 3115.882 kb on + strand, within purU

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml
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3,113,164 + Shew_2637 0.63 +0.1
3,113,283 - Shew_2637 0.67 -0.9
3,113,384 - Shew_2637 0.71 -3.0
3,113,597 + Shew_2637 0.79 -3.6
3,115,421 + Shew_2639 0.64 -0.4
3,115,652 - +1.0
3,115,713 + +2.4
3,115,721 - -0.3
3,115,882 + purU Shew_2640 0.28 -1.1

Or see this region's nucleotide sequence