Strain Fitness in Shewanella loihica PV-4 around Shew_1972

Experiment: Spectinomycin 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 10 mg/ml
2,278,910	+		Shew_1971	0.36	+0.7
2,278,913	-		Shew_1971	0.37	-0.7
2,278,919	+		Shew_1971	0.37	-1.3
2,279,224	-		Shew_1971	0.63	-0.0
2,279,261	-		Shew_1971	0.66	-0.3
2,279,294	-		Shew_1971	0.69	-0.2
2,279,294	-		Shew_1971	0.69	-0.0
2,279,311	+		Shew_1971	0.70	-0.3
2,279,319	-		Shew_1971	0.71	+0.7
2,279,319	-		Shew_1971	0.71	-0.0
2,279,361	+		Shew_1971	0.75	+0.9
2,279,391	+		Shew_1971	0.77	+1.7
2,279,391	+		Shew_1971	0.77	+0.0
2,279,399	-		Shew_1971	0.78	+0.1
2,279,399	-		Shew_1971	0.78	+0.1
2,279,399	-		Shew_1971	0.78	+0.3
2,279,399	-		Shew_1971	0.78	-0.2
2,279,399	-		Shew_1971	0.78	-0.8
2,279,399	-		Shew_1971	0.78	+0.3
2,279,399	-		Shew_1971	0.78	+1.4
2,279,399	-		Shew_1971	0.78	-1.3
2,279,409	+		Shew_1971	0.79	+1.3
2,279,416	+		Shew_1971	0.79	-1.0
2,279,424	-		Shew_1971	0.80	+0.2
2,279,434	-		Shew_1971	0.81	+0.2
2,279,434	-		Shew_1971	0.81	+0.7
2,279,440	-		Shew_1971	0.81	+0.7
2,279,441	+		Shew_1971	0.81	+0.5
2,279,444	-		Shew_1971	0.82	+0.9
2,279,449	-		Shew_1971	0.82	+1.3
2,279,449	-		Shew_1971	0.82	+0.3
2,279,460	+		Shew_1971	0.83	+0.8
2,279,468	-		Shew_1971	0.84	-0.5
2,279,469	+		Shew_1971	0.84	+2.8
2,279,474	+		Shew_1971	0.84	+0.7
2,279,474	+		Shew_1971	0.84	-0.7
2,279,474	+		Shew_1971	0.84	-1.3
2,279,476	+		Shew_1971	0.84	-1.7
2,279,477	-		Shew_1971	0.84	+0.4
2,279,477	-		Shew_1971	0.84	+0.5
2,279,482	-		Shew_1971	0.85	-0.1
2,279,486	+		Shew_1971	0.85	+1.9
2,279,497	-		Shew_1971	0.86	+0.0
2,279,498	-		Shew_1971	0.86	+0.4
2,279,502	-		Shew_1971	0.87	+0.3
2,279,504	+		Shew_1971	0.87	+1.4
2,279,521	-		Shew_1971	0.88	+0.6
2,279,540	-		Shew_1971	0.90	+0.4
2,279,566	+				-0.7
2,279,574	-				-0.1
2,279,577	+				-1.0
2,279,585	-				-0.8
2,279,587	-				-0.3
2,279,645	+				+0.3
2,279,645	+				-1.9
2,279,645	+				+0.3
2,279,645	+				+0.1
2,279,645	+				-0.4
2,279,645	+				+1.9
2,279,645	+				-0.1
2,279,650	+				-0.7
2,279,653	-				+0.5
2,279,653	-				-0.1
2,279,653	-				-0.6
2,279,653	-				-0.3
2,279,653	-				-0.8
2,279,653	-				-0.3
2,279,653	-				+0.3
2,279,653	-				+1.0
2,279,658	-				-1.3
2,279,658	-				+0.3
2,279,750	+				-0.8
2,279,758	-				+1.1
2,279,758	-				-0.7
2,279,815	+				+0.8
2,279,900	+				+0.2
2,279,900	+				+0.5
2,279,900	+				+1.6
2,279,901	+				-0.8
2,279,901	+				-0.6
2,279,904	-				-2.7
2,279,919	+				+0.3
2,279,924	+				+0.4
2,279,924	+				+0.5
2,279,924	+				+0.3
2,279,924	+				-0.4
2,279,924	+				-0.1
2,279,924	+				+0.9
2,279,924	+				-0.3
2,279,924	+				+0.3
2,279,924	+				-0.3
2,279,924	+				+0.2
2,279,924	+				+0.2
2,279,924	+				+2.3
2,279,924	+				+0.6
2,279,924	+				-0.0
2,279,924	+				+0.6
2,279,924	+				-0.0
2,279,924	+				+0.6
2,279,924	+				+0.7
2,279,929	+				+0.5
2,279,932	-				+1.9
2,279,932	-				-1.8
2,279,932	-				-0.1
2,279,932	-				+0.3
2,279,932	-				-1.5
2,279,932	-				-1.5
2,279,932	-				-0.3
2,279,932	-				+0.1
2,279,938	-				-0.3
2,279,948	+				-0.1
2,279,953	+				+0.5
2,279,955	+				+0.4
2,279,970	+				-1.3
2,279,978	-				+1.4
2,279,978	-				+0.7
2,279,986	+				-0.2
2,280,019	+		Shew_1972	0.12	+0.6
2,280,019	+		Shew_1972	0.12	+0.3
2,280,027	-		Shew_1972	0.13	+0.1
2,280,027	-		Shew_1972	0.13	-0.1
2,280,027	-		Shew_1972	0.13	+0.1
2,280,027	-		Shew_1972	0.13	-1.3
2,280,032	-		Shew_1972	0.13	-1.3
2,280,034	+		Shew_1972	0.13	+1.1
2,280,034	+		Shew_1972	0.13	-0.4
2,280,034	+		Shew_1972	0.13	+1.3
2,280,034	+		Shew_1972	0.13	+0.6
2,280,034	+		Shew_1972	0.13	+0.9
2,280,034	+		Shew_1972	0.13	+0.1
2,280,034	+		Shew_1972	0.13	+0.5
2,280,042	-		Shew_1972	0.14	+0.3
2,280,042	-		Shew_1972	0.14	+0.7
2,280,077	+		Shew_1972	0.16	+0.4
2,280,572	+		Shew_1972	0.53	+1.6
2,280,621	+		Shew_1972	0.57	+0.4
2,281,099	-				-0.5
2,281,125	+				-1.7
2,281,434	-		Shew_1973	0.20	+0.3
2,281,487	-		Shew_1973	0.25	+0.5
2,281,801	+		Shew_1973	0.55	-0.2
2,281,809	-		Shew_1973	0.55	-0.8
2,281,846	-		Shew_1973	0.59	+0.0
2,281,878	+		Shew_1973	0.62	-0.1
2,281,886	-		Shew_1973	0.63	+0.4
2,281,886	-		Shew_1973	0.63	+0.1
2,282,180	-				-0.0