Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0789 and Shew_0790 are separated by 16 nucleotides Shew_0790 and Shew_0791 are separated by 347 nucleotides Shew_0791 and Shew_0792 are separated by 197 nucleotides Shew_0792 and Shew_0793 are separated by 176 nucleotides
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Shew_0790: Shew_0790 - hypothetical protein (RefSeq), at 902,530 to 903,081
_0790
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939
_0792
Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681
_0793
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 902.491 kb on + strand at 902.579 kb on + strand at 902.719 kb on + strand, within Shew_0790 at 902.868 kb on - strand, within Shew_0790 at 902.967 kb on + strand, within Shew_0790 at 902.975 kb on - strand, within Shew_0790 at 903.226 kb on - strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.256 kb on - strand at 903.256 kb on - strand at 903.292 kb on + strand at 903.294 kb on + strand at 903.381 kb on - strand at 903.522 kb on - strand, within Shew_0791 at 903.526 kb on + strand, within Shew_0791 at 903.550 kb on + strand, within Shew_0791 at 903.568 kb on - strand, within Shew_0791 at 903.669 kb on - strand, within Shew_0791 at 903.917 kb on + strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 904.523 kb on - strand, within Shew_0792 at 904.561 kb on + strand, within Shew_0792 at 904.569 kb on - strand, within Shew_0792 at 904.722 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.817 kb on - strand, within Shew_0792 at 904.877 kb on + strand, within Shew_0792 at 904.878 kb on + strand, within Shew_0792 at 904.892 kb on + strand at 904.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml remove 902,491 + +1.1 902,579 + +0.4 902,719 + Shew_0790 0.34 +0.4 902,868 - Shew_0790 0.61 +0.4 902,967 + Shew_0790 0.79 +0.1 902,975 - Shew_0790 0.81 -2.9 903,226 - +0.6 903,248 + -1.0 903,248 + +0.1 903,248 + -0.0 903,248 + +0.0 903,248 + -0.4 903,256 - -0.4 903,256 - +0.1 903,292 + +1.4 903,294 + -0.6 903,381 - +0.6 903,522 - Shew_0791 0.12 -0.1 903,526 + Shew_0791 0.13 +0.2 903,550 + Shew_0791 0.16 +0.3 903,568 - Shew_0791 0.19 +1.4 903,669 - Shew_0791 0.32 +0.6 903,917 + Shew_0791 0.66 -0.2 903,925 - Shew_0791 0.67 -0.8 903,925 - Shew_0791 0.67 +0.8 903,925 - Shew_0791 0.67 +0.6 903,925 - Shew_0791 0.67 +0.4 903,925 - Shew_0791 0.67 +0.1 904,523 - Shew_0792 0.27 -1.7 904,561 + Shew_0792 0.34 -2.0 904,569 - Shew_0792 0.35 -2.0 904,722 + Shew_0792 0.62 -2.3 904,809 + Shew_0792 0.77 -0.9 904,809 + Shew_0792 0.77 -1.3 904,817 - Shew_0792 0.78 -2.1 904,877 + Shew_0792 0.89 -2.4 904,878 + Shew_0792 0.89 -1.8 904,892 + -3.6 904,892 + -2.3
Or see this region's nucleotide sequence