Strain Fitness in Shewanella loihica PV-4 around Shew_0735

Experiment: Spectinomycin 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0733 and Shew_0734 are separated by 237 nucleotidesShew_0734 and Shew_0735 are separated by 20 nucleotidesShew_0735 and Shew_0736 are separated by 104 nucleotides Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405 _0733 Shew_0734: Shew_0734 - Fe-S metabolism associated SufE (RefSeq), at 835,643 to 836,095 _0734 Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327 _0735 Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472 _0736 Position (kb) 836 837 838Strain fitness (log2 ratio) -1 0 1at 835.380 kb on + strandat 835.542 kb on + strandat 835.550 kb on - strandat 836.082 kb on - strandat 836.608 kb on - strand, within Shew_0735at 836.762 kb on + strand, within Shew_0735at 837.045 kb on - strand, within Shew_0735at 837.097 kb on - strand, within Shew_0735at 837.591 kb on + strand, within Shew_0736at 837.967 kb on + strand, within Shew_0736at 838.136 kb on - strand, within Shew_0736

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml
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835,380 + -0.8
835,542 + +0.7
835,550 - -0.1
836,082 - +0.4
836,608 - Shew_0735 0.41 +0.5
836,762 + Shew_0735 0.53 +0.1
837,045 - Shew_0735 0.77 -1.0
837,097 - Shew_0735 0.81 -1.3
837,591 + Shew_0736 0.15 -0.0
837,967 + Shew_0736 0.51 +0.4
838,136 - Shew_0736 0.68 +0.1

Or see this region's nucleotide sequence