Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0311 and Shew_0312 overlap by 8 nucleotides Shew_0312 and Shew_0313 are separated by 134 nucleotides
Shew_0311: Shew_0311 - HlyD family type I secretion membrane fusion protein (RefSeq), at 337,305 to 338,687
_0311
Shew_0312: Shew_0312 - ABC transporter-related protein (RefSeq), at 338,680 to 340,860
_0312
Shew_0313: Shew_0313 - putative outer membrane adhesin like proteiin (RefSeq), at 340,995 to 355,505
_0313
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -1
0
1 at 337.891 kb on + strand, within Shew_0311 at 337.901 kb on + strand, within Shew_0311 at 338.093 kb on - strand, within Shew_0311 at 338.192 kb on + strand, within Shew_0311 at 338.251 kb on + strand, within Shew_0311 at 338.251 kb on + strand, within Shew_0311 at 338.331 kb on + strand, within Shew_0311 at 338.497 kb on + strand, within Shew_0311 at 338.595 kb on - strand at 338.679 kb on - strand at 338.695 kb on - strand at 338.707 kb on - strand at 338.724 kb on + strand at 338.945 kb on + strand, within Shew_0312 at 339.066 kb on - strand, within Shew_0312 at 339.201 kb on - strand, within Shew_0312 at 339.270 kb on + strand, within Shew_0312 at 339.278 kb on - strand, within Shew_0312 at 339.358 kb on + strand, within Shew_0312 at 339.488 kb on - strand, within Shew_0312 at 339.745 kb on + strand, within Shew_0312 at 339.765 kb on - strand, within Shew_0312 at 339.827 kb on - strand, within Shew_0312 at 340.307 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.487 kb on - strand, within Shew_0312 at 340.770 kb on + strand at 340.811 kb on - strand at 340.868 kb on - strand at 340.977 kb on + strand at 341.098 kb on + strand at 341.397 kb on + strand at 341.422 kb on - strand at 341.603 kb on + strand at 341.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml remove 337,891 + Shew_0311 0.42 -0.7 337,901 + Shew_0311 0.43 -0.3 338,093 - Shew_0311 0.57 -0.2 338,192 + Shew_0311 0.64 -0.2 338,251 + Shew_0311 0.68 -0.3 338,251 + Shew_0311 0.68 -0.6 338,331 + Shew_0311 0.74 +0.3 338,497 + Shew_0311 0.86 +0.1 338,595 - +0.5 338,679 - -0.6 338,695 - -0.1 338,707 - +0.2 338,724 + +0.8 338,945 + Shew_0312 0.12 +1.0 339,066 - Shew_0312 0.18 +0.1 339,201 - Shew_0312 0.24 +0.6 339,270 + Shew_0312 0.27 +0.7 339,278 - Shew_0312 0.27 +0.4 339,358 + Shew_0312 0.31 +0.2 339,488 - Shew_0312 0.37 +0.3 339,745 + Shew_0312 0.49 -0.2 339,765 - Shew_0312 0.50 +0.4 339,827 - Shew_0312 0.53 +1.0 340,307 + Shew_0312 0.75 +0.6 340,479 + Shew_0312 0.82 +0.3 340,479 + Shew_0312 0.82 -0.4 340,487 - Shew_0312 0.83 -0.0 340,770 + -0.3 340,811 - +0.4 340,868 - +0.2 340,977 + +0.0 341,098 + +0.4 341,397 + -0.2 341,422 - -0.1 341,603 + +0.6 341,716 + +0.6
Or see this region's nucleotide sequence