Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0278 and Shew_0279 are separated by 43 nucleotides Shew_0279 and Shew_0280 are separated by 207 nucleotides Shew_0280 and Shew_0281 are separated by 193 nucleotides
Shew_0278: Shew_0278 - branched-chain amino acid aminotransferase (RefSeq), at 295,678 to 296,769
_0278
Shew_0279: Shew_0279 - hypothetical protein (RefSeq), at 296,813 to 297,241
_0279
Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150
_0280
Shew_0281: Shew_0281 - phospholipid/glycerol acyltransferase (RefSeq), at 298,344 to 299,291
_0281
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.613 kb on - strand, within Shew_0278 at 296.908 kb on - strand, within Shew_0279 at 297.082 kb on + strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.151 kb on - strand, within Shew_0279 at 297.157 kb on - strand, within Shew_0279 at 297.446 kb on + strand at 297.454 kb on - strand at 297.752 kb on - strand, within Shew_0280 at 297.875 kb on + strand, within Shew_0280 at 297.893 kb on - strand, within Shew_0280 at 298.049 kb on - strand, within Shew_0280 at 298.618 kb on - strand, within Shew_0281 at 298.697 kb on + strand, within Shew_0281 at 298.767 kb on + strand, within Shew_0281 at 298.777 kb on + strand, within Shew_0281 at 298.777 kb on + strand, within Shew_0281 at 298.855 kb on + strand, within Shew_0281 at 298.978 kb on - strand, within Shew_0281
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml remove 296,498 + Shew_0278 0.75 +0.1 296,498 + Shew_0278 0.75 +0.0 296,498 + Shew_0278 0.75 -0.3 296,498 + Shew_0278 0.75 +0.3 296,498 + Shew_0278 0.75 +0.7 296,506 - Shew_0278 0.76 -0.8 296,506 - Shew_0278 0.76 +0.1 296,506 - Shew_0278 0.76 -1.0 296,613 - Shew_0278 0.86 +0.6 296,908 - Shew_0279 0.22 -0.1 297,082 + Shew_0279 0.63 +0.4 297,090 - Shew_0279 0.65 +0.2 297,090 - Shew_0279 0.65 +0.2 297,151 - Shew_0279 0.79 +0.4 297,157 - Shew_0279 0.80 -0.9 297,446 + -2.0 297,454 - -0.4 297,752 - Shew_0280 0.43 -0.7 297,875 + Shew_0280 0.61 -0.8 297,893 - Shew_0280 0.63 -0.1 298,049 - Shew_0280 0.85 -0.3 298,618 - Shew_0281 0.29 +0.4 298,697 + Shew_0281 0.37 +0.3 298,767 + Shew_0281 0.45 +0.4 298,777 + Shew_0281 0.46 +0.7 298,777 + Shew_0281 0.46 +0.3 298,855 + Shew_0281 0.54 -0.1 298,978 - Shew_0281 0.67 +0.5
Or see this region's nucleotide sequence