Strain Fitness in Shewanella loihica PV-4 around Shew_0108

Experiment: Spectinomycin 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 10 mg/ml
117,544	-		Shew_0107	0.30	-0.5
117,687	+		Shew_0107	0.40	-1.4
117,898	+		Shew_0107	0.56	-2.0
117,898	+		Shew_0107	0.56	+0.3
117,969	+		Shew_0107	0.61	-1.6
117,998	+		Shew_0107	0.63	-0.8
118,352	+		Shew_0107	0.90	-2.1
118,608	+				-0.7
118,608	+				-0.6
118,608	+				-0.6
118,608	+				-1.3
118,608	+				-0.4
118,616	-				-0.0
118,616	-				-0.6
118,616	-				-0.7
118,616	-				-0.2
118,616	-				-0.8
118,623	+		Shew_0108	0.10	-0.4
118,794	+		Shew_0108	0.27	-0.1
118,845	+		Shew_0108	0.32	-0.4
118,911	+		Shew_0108	0.38	+0.1
119,256	-		Shew_0108	0.71	-0.7
119,290	+		Shew_0108	0.74	-0.1
119,400	-		Shew_0108	0.85	-0.1
119,422	-		Shew_0108	0.87	-0.2
119,467	+				-0.6
119,482	-				-0.1
119,482	-				-2.0
119,555	-				-0.3
119,572	-				+0.1
119,759	-		Shew_0109	0.13	-1.3
119,785	+		Shew_0109	0.16	+0.5
119,793	-		Shew_0109	0.17	-0.2
119,793	-		Shew_0109	0.17	-0.8
119,907	-		Shew_0109	0.28	+0.1
120,308	+		Shew_0109	0.66	+0.0
120,518	+		Shew_0109	0.86	+0.5
120,523	+		Shew_0109	0.86	+0.3
120,531	-		Shew_0109	0.87	-0.1