Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0892

Experiment: BHIS with Benzethonium chloride 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0890 and BT0891 are separated by 75 nucleotidesBT0891 and BT0892 overlap by 13 nucleotidesBT0892 and BT0893 are separated by 218 nucleotidesBT0893 and BT0894 are separated by 76 nucleotides BT0890: BT0890 - hypothetical protein (NCBI ptt file), at 1,093,156 to 1,093,626 BT0890 BT0891: BT0891 - dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file), at 1,093,702 to 1,094,478 BT0891 BT0892: BT0892 - dihydroorotate dehydrogenase (NCBI ptt file), at 1,094,466 to 1,095,377 BT0892 BT0893: BT0893 - tRNA (Guanine-N(1)-methyltransferase (NCBI ptt file), at 1,095,596 to 1,096,273 BT0893 BT0894: BT0894 - DNA ligase (NCBI ptt file), at 1,096,350 to 1,098,350 BT0894 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1093.600 kb on + strandat 1093.699 kb on + strandat 1094.002 kb on + strand, within BT0891at 1094.004 kb on + strand, within BT0891at 1094.072 kb on + strand, within BT0891at 1094.185 kb on + strand, within BT0891at 1094.188 kb on - strand, within BT0891at 1094.241 kb on + strand, within BT0891at 1094.358 kb on + strand, within BT0891at 1094.358 kb on + strand, within BT0891at 1094.669 kb on - strand, within BT0892at 1094.732 kb on - strand, within BT0892at 1094.837 kb on - strandat 1094.927 kb on - strand, within BT0892at 1095.470 kb on + strandat 1095.716 kb on - strand, within BT0893at 1096.314 kb on + strandat 1096.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Benzethonium chloride 0.002 mM
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1,093,600 + +1.6
1,093,699 + -0.9
1,094,002 + BT0891 0.39 -1.1
1,094,004 + BT0891 0.39 -4.7
1,094,072 + BT0891 0.48 -2.6
1,094,185 + BT0891 0.62 -3.7
1,094,188 - BT0891 0.63 -3.6
1,094,241 + BT0891 0.69 -4.0
1,094,358 + BT0891 0.84 -2.6
1,094,358 + BT0891 0.84 -3.1
1,094,669 - BT0892 0.22 -5.2
1,094,732 - BT0892 0.29 -2.7
1,094,837 - -2.1
1,094,927 - BT0892 0.51 -3.0
1,095,470 + -0.0
1,095,716 - BT0893 0.18 -3.0
1,096,314 + -2.1
1,096,333 + -1.4

Or see this region's nucleotide sequence