Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.970.1 and Xcc-8004.971.1 are separated by 203 nucleotides Xcc-8004.971.1 and Xcc-8004.972.1 are separated by 222 nucleotides Xcc-8004.972.1 and Xcc-8004.973.1 are separated by 39 nucleotides
Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656
Xcc-8004.970.1
Xcc-8004.971.1: Xcc-8004.971.1 - GTP-binding protein EngB, at 922,860 to 923,426
Xcc-8004.971.1
Xcc-8004.972.1: Xcc-8004.972.1 - Glutamate--cysteine ligase (EC 6.3.2.2), at 923,649 to 925,286
Xcc-8004.972.1
Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822
Xcc-8004.973.1
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1 at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.672 kb on - strand at 923.424 kb on + strand at 923.425 kb on - strand at 923.594 kb on + strand at 923.594 kb on + strand at 923.595 kb on - strand at 923.849 kb on + strand, within Xcc-8004.972.1 at 923.849 kb on + strand, within Xcc-8004.972.1 at 923.850 kb on - strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 925.281 kb on + strand at 925.610 kb on - strand, within Xcc-8004.973.1 at 925.610 kb on - strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.725 kb on - strand, within Xcc-8004.973.1 at 925.725 kb on - strand, within Xcc-8004.973.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 922,662 - -0.3 922,662 - -1.1 922,662 - -0.8 922,662 - -0.2 922,662 - -0.2 922,662 - -0.6 922,662 - +0.6 922,672 - +0.6 923,424 + +0.6 923,425 - +0.7 923,594 + +1.0 923,594 + -0.5 923,595 - -0.0 923,849 + Xcc-8004.972.1 0.12 -0.4 923,849 + Xcc-8004.972.1 0.12 +0.7 923,850 - Xcc-8004.972.1 0.12 -0.2 923,851 + Xcc-8004.972.1 0.12 -0.0 923,851 + Xcc-8004.972.1 0.12 -0.6 923,851 + Xcc-8004.972.1 0.12 -0.6 923,851 + Xcc-8004.972.1 0.12 +0.0 923,851 + Xcc-8004.972.1 0.12 -2.5 923,851 + Xcc-8004.972.1 0.12 +0.1 923,852 - Xcc-8004.972.1 0.12 -0.6 923,852 - Xcc-8004.972.1 0.12 -1.9 923,852 - Xcc-8004.972.1 0.12 -0.0 923,852 - Xcc-8004.972.1 0.12 -0.2 923,852 - Xcc-8004.972.1 0.12 -0.7 923,852 - Xcc-8004.972.1 0.12 -0.5 923,852 - Xcc-8004.972.1 0.12 -0.1 925,281 + +0.6 925,610 - Xcc-8004.973.1 0.19 -0.4 925,610 - Xcc-8004.973.1 0.19 +0.3 925,724 + Xcc-8004.973.1 0.27 -0.2 925,724 + Xcc-8004.973.1 0.27 -0.0 925,724 + Xcc-8004.973.1 0.27 -1.8 925,725 - Xcc-8004.973.1 0.27 +0.3 925,725 - Xcc-8004.973.1 0.27 -0.5
Or see this region's nucleotide sequence