Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.970.1 and Xcc-8004.971.1 are separated by 203 nucleotides Xcc-8004.971.1 and Xcc-8004.972.1 are separated by 222 nucleotides
Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656
Xcc-8004.970.1
Xcc-8004.971.1: Xcc-8004.971.1 - GTP-binding protein EngB, at 922,860 to 923,426
Xcc-8004.971.1
Xcc-8004.972.1: Xcc-8004.972.1 - Glutamate--cysteine ligase (EC 6.3.2.2), at 923,649 to 925,286
Xcc-8004.972.1
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 921.935 kb on + strand at 921.935 kb on + strand at 921.993 kb on + strand, within Xcc-8004.970.1 at 921.994 kb on - strand, within Xcc-8004.970.1 at 922.038 kb on - strand, within Xcc-8004.970.1 at 922.038 kb on - strand, within Xcc-8004.970.1 at 922.061 kb on + strand, within Xcc-8004.970.1 at 922.197 kb on - strand, within Xcc-8004.970.1 at 922.277 kb on + strand, within Xcc-8004.970.1 at 922.350 kb on + strand, within Xcc-8004.970.1 at 922.395 kb on - strand, within Xcc-8004.970.1 at 922.424 kb on + strand, within Xcc-8004.970.1 at 922.424 kb on + strand, within Xcc-8004.970.1 at 922.425 kb on - strand, within Xcc-8004.970.1 at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.672 kb on - strand at 923.424 kb on + strand at 923.425 kb on - strand at 923.594 kb on + strand at 923.594 kb on + strand at 923.595 kb on - strand at 923.849 kb on + strand, within Xcc-8004.972.1 at 923.849 kb on + strand, within Xcc-8004.972.1 at 923.850 kb on - strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.851 kb on + strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1 at 923.852 kb on - strand, within Xcc-8004.972.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 921,935 + -0.5 921,935 + +0.6 921,993 + Xcc-8004.970.1 0.17 -1.0 921,994 - Xcc-8004.970.1 0.17 -2.0 922,038 - Xcc-8004.970.1 0.22 +1.1 922,038 - Xcc-8004.970.1 0.22 -0.8 922,061 + Xcc-8004.970.1 0.25 +0.2 922,197 - Xcc-8004.970.1 0.42 +2.4 922,277 + Xcc-8004.970.1 0.52 -0.6 922,350 + Xcc-8004.970.1 0.62 -0.6 922,395 - Xcc-8004.970.1 0.67 +2.8 922,424 + Xcc-8004.970.1 0.71 -0.3 922,424 + Xcc-8004.970.1 0.71 -1.7 922,425 - Xcc-8004.970.1 0.71 -0.6 922,662 - -0.3 922,662 - -1.1 922,662 - -0.8 922,662 - -0.2 922,662 - -0.2 922,662 - -0.6 922,662 - +0.6 922,672 - +0.6 923,424 + +0.6 923,425 - +0.7 923,594 + +1.0 923,594 + -0.5 923,595 - -0.0 923,849 + Xcc-8004.972.1 0.12 -0.4 923,849 + Xcc-8004.972.1 0.12 +0.7 923,850 - Xcc-8004.972.1 0.12 -0.2 923,851 + Xcc-8004.972.1 0.12 -0.0 923,851 + Xcc-8004.972.1 0.12 -0.6 923,851 + Xcc-8004.972.1 0.12 -0.6 923,851 + Xcc-8004.972.1 0.12 +0.0 923,851 + Xcc-8004.972.1 0.12 -2.5 923,851 + Xcc-8004.972.1 0.12 +0.1 923,852 - Xcc-8004.972.1 0.12 -0.6 923,852 - Xcc-8004.972.1 0.12 -1.9 923,852 - Xcc-8004.972.1 0.12 -0.0 923,852 - Xcc-8004.972.1 0.12 -0.2 923,852 - Xcc-8004.972.1 0.12 -0.7 923,852 - Xcc-8004.972.1 0.12 -0.5 923,852 - Xcc-8004.972.1 0.12 -0.1
Or see this region's nucleotide sequence