Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.872.1 and Xcc-8004.873.1 are separated by 34 nucleotides Xcc-8004.873.1 and Xcc-8004.874.1 are separated by 10 nucleotides
Xcc-8004.872.1: Xcc-8004.872.1 - surface antigen gene, at 820,083 to 821,129
Xcc-8004.872.1
Xcc-8004.873.1: Xcc-8004.873.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 821,164 to 822,270
Xcc-8004.873.1
Xcc-8004.874.1: Xcc-8004.874.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 822,281 to 824,665
Xcc-8004.874.1
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 820.357 kb on + strand, within Xcc-8004.872.1 at 820.383 kb on + strand, within Xcc-8004.872.1 at 820.384 kb on - strand, within Xcc-8004.872.1 at 820.384 kb on - strand, within Xcc-8004.872.1 at 820.615 kb on - strand, within Xcc-8004.872.1 at 820.764 kb on + strand, within Xcc-8004.872.1 at 820.765 kb on - strand, within Xcc-8004.872.1 at 820.890 kb on + strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.572 kb on - strand, within Xcc-8004.873.1 at 821.591 kb on - strand, within Xcc-8004.873.1 at 821.591 kb on - strand, within Xcc-8004.873.1 at 822.136 kb on + strand, within Xcc-8004.873.1 at 822.137 kb on - strand, within Xcc-8004.873.1 at 822.148 kb on + strand, within Xcc-8004.873.1 at 822.471 kb on - strand at 822.471 kb on - strand at 822.659 kb on + strand, within Xcc-8004.874.1 at 822.890 kb on + strand, within Xcc-8004.874.1 at 822.890 kb on + strand, within Xcc-8004.874.1 at 822.890 kb on + strand, within Xcc-8004.874.1 at 822.890 kb on + strand, within Xcc-8004.874.1 at 822.890 kb on + strand, within Xcc-8004.874.1 at 823.124 kb on + strand, within Xcc-8004.874.1 at 823.124 kb on + strand, within Xcc-8004.874.1 at 823.125 kb on - strand, within Xcc-8004.874.1 at 823.148 kb on + strand, within Xcc-8004.874.1 at 823.148 kb on + strand, within Xcc-8004.874.1 at 823.149 kb on - strand, within Xcc-8004.874.1 at 823.149 kb on - strand, within Xcc-8004.874.1 at 823.149 kb on - strand, within Xcc-8004.874.1 at 823.149 kb on - strand, within Xcc-8004.874.1 at 823.180 kb on + strand, within Xcc-8004.874.1 at 823.180 kb on + strand, within Xcc-8004.874.1 at 823.244 kb on + strand, within Xcc-8004.874.1 at 823.245 kb on - strand, within Xcc-8004.874.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 820,357 + Xcc-8004.872.1 0.26 +0.1 820,383 + Xcc-8004.872.1 0.29 -0.0 820,384 - Xcc-8004.872.1 0.29 -0.3 820,384 - Xcc-8004.872.1 0.29 -0.1 820,615 - Xcc-8004.872.1 0.51 -0.5 820,764 + Xcc-8004.872.1 0.65 -0.6 820,765 - Xcc-8004.872.1 0.65 +1.3 820,890 + Xcc-8004.872.1 0.77 +0.1 820,891 - Xcc-8004.872.1 0.77 +0.7 820,891 - Xcc-8004.872.1 0.77 +0.2 820,891 - Xcc-8004.872.1 0.77 +0.3 821,016 + Xcc-8004.872.1 0.89 +0.5 821,016 + Xcc-8004.872.1 0.89 -0.3 821,016 + Xcc-8004.872.1 0.89 +1.1 821,016 + Xcc-8004.872.1 0.89 +0.4 821,016 + Xcc-8004.872.1 0.89 -0.2 821,017 - Xcc-8004.872.1 0.89 -0.3 821,017 - Xcc-8004.872.1 0.89 +0.1 821,017 - Xcc-8004.872.1 0.89 -2.4 821,572 - Xcc-8004.873.1 0.37 +0.1 821,591 - Xcc-8004.873.1 0.39 -0.0 821,591 - Xcc-8004.873.1 0.39 +1.0 822,136 + Xcc-8004.873.1 0.88 +1.4 822,137 - Xcc-8004.873.1 0.88 +0.4 822,148 + Xcc-8004.873.1 0.89 +0.5 822,471 - +0.4 822,471 - +0.2 822,659 + Xcc-8004.874.1 0.16 +0.3 822,890 + Xcc-8004.874.1 0.26 +0.0 822,890 + Xcc-8004.874.1 0.26 +1.2 822,890 + Xcc-8004.874.1 0.26 -0.3 822,890 + Xcc-8004.874.1 0.26 -0.0 822,890 + Xcc-8004.874.1 0.26 -0.5 823,124 + Xcc-8004.874.1 0.35 +0.0 823,124 + Xcc-8004.874.1 0.35 +0.6 823,125 - Xcc-8004.874.1 0.35 -0.4 823,148 + Xcc-8004.874.1 0.36 +0.0 823,148 + Xcc-8004.874.1 0.36 +1.6 823,149 - Xcc-8004.874.1 0.36 +0.1 823,149 - Xcc-8004.874.1 0.36 -0.3 823,149 - Xcc-8004.874.1 0.36 -0.3 823,149 - Xcc-8004.874.1 0.36 -0.5 823,180 + Xcc-8004.874.1 0.38 -0.4 823,180 + Xcc-8004.874.1 0.38 -0.9 823,244 + Xcc-8004.874.1 0.40 -0.0 823,245 - Xcc-8004.874.1 0.40 -1.0
Or see this region's nucleotide sequence