Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5035.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5034.1 and Xcc-8004.5035.1 are separated by 9 nucleotidesXcc-8004.5035.1 and Xcc-8004.5036.1 are separated by 138 nucleotides Xcc-8004.5034.1: Xcc-8004.5034.1 - Pass1-related protein, at 4,773,875 to 4,774,888 Xcc-8004.5034.1 Xcc-8004.5035.1: Xcc-8004.5035.1 - Tryptophan halogenase, at 4,774,898 to 4,776,460 Xcc-8004.5035.1 Xcc-8004.5036.1: Xcc-8004.5036.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 4,776,599 to 4,777,606 Xcc-8004.5036.1 Position (kb) 4774 4775 4776 4777Strain fitness (log2 ratio) -2 -1 0 1 2at 4774.037 kb on + strand, within Xcc-8004.5034.1at 4774.037 kb on + strand, within Xcc-8004.5034.1at 4774.038 kb on - strand, within Xcc-8004.5034.1at 4774.112 kb on + strand, within Xcc-8004.5034.1at 4774.112 kb on + strand, within Xcc-8004.5034.1at 4774.113 kb on - strand, within Xcc-8004.5034.1at 4774.113 kb on - strand, within Xcc-8004.5034.1at 4774.220 kb on + strand, within Xcc-8004.5034.1at 4774.220 kb on + strand, within Xcc-8004.5034.1at 4774.220 kb on + strand, within Xcc-8004.5034.1at 4774.220 kb on + strand, within Xcc-8004.5034.1at 4774.220 kb on + strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.221 kb on - strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.247 kb on + strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.248 kb on - strand, within Xcc-8004.5034.1at 4774.430 kb on + strand, within Xcc-8004.5034.1at 4774.430 kb on + strand, within Xcc-8004.5034.1at 4774.431 kb on - strand, within Xcc-8004.5034.1at 4774.483 kb on + strand, within Xcc-8004.5034.1at 4774.661 kb on + strand, within Xcc-8004.5034.1at 4774.661 kb on + strand, within Xcc-8004.5034.1at 4774.662 kb on - strand, within Xcc-8004.5034.1at 4774.662 kb on - strand, within Xcc-8004.5034.1at 4774.662 kb on - strand, within Xcc-8004.5034.1at 4774.662 kb on - strand, within Xcc-8004.5034.1at 4774.662 kb on - strand, within Xcc-8004.5034.1at 4774.760 kb on + strand, within Xcc-8004.5034.1at 4774.760 kb on + strand, within Xcc-8004.5034.1at 4774.760 kb on + strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.761 kb on - strand, within Xcc-8004.5034.1at 4774.764 kb on + strand, within Xcc-8004.5034.1at 4774.764 kb on + strand, within Xcc-8004.5034.1at 4774.764 kb on + strand, within Xcc-8004.5034.1at 4774.764 kb on + strand, within Xcc-8004.5034.1at 4774.764 kb on + strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4774.765 kb on - strand, within Xcc-8004.5034.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.198 kb on + strand, within Xcc-8004.5035.1at 4775.199 kb on - strand, within Xcc-8004.5035.1at 4775.199 kb on - strand, within Xcc-8004.5035.1at 4775.199 kb on - strand, within Xcc-8004.5035.1at 4775.199 kb on - strand, within Xcc-8004.5035.1at 4775.199 kb on - strand, within Xcc-8004.5035.1at 4775.303 kb on + strand, within Xcc-8004.5035.1at 4775.304 kb on - strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.369 kb on + strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.370 kb on - strand, within Xcc-8004.5035.1at 4775.375 kb on + strand, within Xcc-8004.5035.1at 4775.375 kb on + strand, within Xcc-8004.5035.1at 4775.376 kb on - strand, within Xcc-8004.5035.1at 4775.376 kb on - strand, within Xcc-8004.5035.1at 4775.376 kb on - strand, within Xcc-8004.5035.1at 4775.396 kb on + strand, within Xcc-8004.5035.1at 4775.396 kb on + strand, within Xcc-8004.5035.1at 4775.753 kb on + strand, within Xcc-8004.5035.1at 4775.895 kb on + strand, within Xcc-8004.5035.1at 4776.017 kb on + strand, within Xcc-8004.5035.1at 4776.018 kb on - strand, within Xcc-8004.5035.1at 4776.018 kb on - strand, within Xcc-8004.5035.1at 4776.049 kb on + strand, within Xcc-8004.5035.1at 4776.074 kb on + strand, within Xcc-8004.5035.1at 4776.075 kb on - strand, within Xcc-8004.5035.1at 4776.075 kb on - strand, within Xcc-8004.5035.1at 4776.384 kb on - strandat 4776.491 kb on + strandat 4776.491 kb on + strandat 4776.491 kb on + strandat 4776.491 kb on + strandat 4776.492 kb on - strandat 4776.511 kb on - strandat 4776.511 kb on - strandat 4776.569 kb on + strandat 4776.569 kb on + strandat 4776.570 kb on - strandat 4776.570 kb on - strandat 4776.587 kb on + strandat 4776.623 kb on - strandat 4776.745 kb on + strand, within Xcc-8004.5036.1at 4776.745 kb on + strand, within Xcc-8004.5036.1at 4776.746 kb on - strand, within Xcc-8004.5036.1at 4776.746 kb on - strand, within Xcc-8004.5036.1at 4776.746 kb on - strand, within Xcc-8004.5036.1at 4776.746 kb on - strand, within Xcc-8004.5036.1at 4776.746 kb on - strand, within Xcc-8004.5036.1at 4776.839 kb on + strand, within Xcc-8004.5036.1at 4776.839 kb on + strand, within Xcc-8004.5036.1at 4776.839 kb on + strand, within Xcc-8004.5036.1at 4776.839 kb on + strand, within Xcc-8004.5036.1at 4776.839 kb on + strand, within Xcc-8004.5036.1at 4776.840 kb on - strand, within Xcc-8004.5036.1at 4776.840 kb on - strand, within Xcc-8004.5036.1at 4776.840 kb on - strand, within Xcc-8004.5036.1at 4776.840 kb on - strand, within Xcc-8004.5036.1at 4776.840 kb on - strand, within Xcc-8004.5036.1at 4776.869 kb on + strand, within Xcc-8004.5036.1at 4776.869 kb on + strand, within Xcc-8004.5036.1at 4776.869 kb on + strand, within Xcc-8004.5036.1at 4776.869 kb on + strand, within Xcc-8004.5036.1at 4776.869 kb on + strand, within Xcc-8004.5036.1at 4776.870 kb on - strand, within Xcc-8004.5036.1at 4776.870 kb on - strand, within Xcc-8004.5036.1at 4776.870 kb on - strand, within Xcc-8004.5036.1at 4776.870 kb on - strand, within Xcc-8004.5036.1at 4776.870 kb on - strand, within Xcc-8004.5036.1at 4776.872 kb on + strand, within Xcc-8004.5036.1at 4776.872 kb on + strand, within Xcc-8004.5036.1at 4776.872 kb on + strand, within Xcc-8004.5036.1at 4776.873 kb on - strand, within Xcc-8004.5036.1at 4776.873 kb on - strand, within Xcc-8004.5036.1at 4776.873 kb on - strand, within Xcc-8004.5036.1at 4776.873 kb on - strand, within Xcc-8004.5036.1at 4776.873 kb on - strand, within Xcc-8004.5036.1at 4776.941 kb on + strand, within Xcc-8004.5036.1at 4776.942 kb on - strand, within Xcc-8004.5036.1at 4777.388 kb on + strand, within Xcc-8004.5036.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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4,774,037 + Xcc-8004.5034.1 0.16 -0.0
4,774,037 + Xcc-8004.5034.1 0.16 +0.3
4,774,038 - Xcc-8004.5034.1 0.16 +0.3
4,774,112 + Xcc-8004.5034.1 0.23 +1.8
4,774,112 + Xcc-8004.5034.1 0.23 +1.1
4,774,113 - Xcc-8004.5034.1 0.23 -0.2
4,774,113 - Xcc-8004.5034.1 0.23 +0.4
4,774,220 + Xcc-8004.5034.1 0.34 +0.6
4,774,220 + Xcc-8004.5034.1 0.34 +0.2
4,774,220 + Xcc-8004.5034.1 0.34 +0.5
4,774,220 + Xcc-8004.5034.1 0.34 +0.7
4,774,220 + Xcc-8004.5034.1 0.34 +0.3
4,774,221 - Xcc-8004.5034.1 0.34 +0.5
4,774,221 - Xcc-8004.5034.1 0.34 -0.2
4,774,221 - Xcc-8004.5034.1 0.34 -0.4
4,774,221 - Xcc-8004.5034.1 0.34 +1.1
4,774,221 - Xcc-8004.5034.1 0.34 -0.2
4,774,221 - Xcc-8004.5034.1 0.34 +0.2
4,774,221 - Xcc-8004.5034.1 0.34 +0.9
4,774,247 + Xcc-8004.5034.1 0.37 +0.2
4,774,247 + Xcc-8004.5034.1 0.37 -0.4
4,774,247 + Xcc-8004.5034.1 0.37 -0.4
4,774,247 + Xcc-8004.5034.1 0.37 -0.2
4,774,247 + Xcc-8004.5034.1 0.37 -0.1
4,774,247 + Xcc-8004.5034.1 0.37 +0.7
4,774,247 + Xcc-8004.5034.1 0.37 +0.1
4,774,247 + Xcc-8004.5034.1 0.37 +1.6
4,774,247 + Xcc-8004.5034.1 0.37 -1.5
4,774,248 - Xcc-8004.5034.1 0.37 +0.7
4,774,248 - Xcc-8004.5034.1 0.37 +0.9
4,774,248 - Xcc-8004.5034.1 0.37 +1.0
4,774,248 - Xcc-8004.5034.1 0.37 +0.0
4,774,248 - Xcc-8004.5034.1 0.37 +0.5
4,774,248 - Xcc-8004.5034.1 0.37 +0.2
4,774,248 - Xcc-8004.5034.1 0.37 -0.1
4,774,248 - Xcc-8004.5034.1 0.37 +0.2
4,774,248 - Xcc-8004.5034.1 0.37 +0.8
4,774,430 + Xcc-8004.5034.1 0.55 +0.8
4,774,430 + Xcc-8004.5034.1 0.55 +0.2
4,774,431 - Xcc-8004.5034.1 0.55 -1.7
4,774,483 + Xcc-8004.5034.1 0.60 +1.5
4,774,661 + Xcc-8004.5034.1 0.78 +0.6
4,774,661 + Xcc-8004.5034.1 0.78 -1.0
4,774,662 - Xcc-8004.5034.1 0.78 +0.6
4,774,662 - Xcc-8004.5034.1 0.78 +0.1
4,774,662 - Xcc-8004.5034.1 0.78 +1.0
4,774,662 - Xcc-8004.5034.1 0.78 +1.1
4,774,662 - Xcc-8004.5034.1 0.78 -0.8
4,774,760 + Xcc-8004.5034.1 0.87 +0.9
4,774,760 + Xcc-8004.5034.1 0.87 +0.9
4,774,760 + Xcc-8004.5034.1 0.87 +0.2
4,774,761 - Xcc-8004.5034.1 0.87 -1.1
4,774,761 - Xcc-8004.5034.1 0.87 -0.4
4,774,761 - Xcc-8004.5034.1 0.87 +0.3
4,774,761 - Xcc-8004.5034.1 0.87 +0.2
4,774,761 - Xcc-8004.5034.1 0.87 +0.1
4,774,761 - Xcc-8004.5034.1 0.87 +1.8
4,774,761 - Xcc-8004.5034.1 0.87 -1.5
4,774,764 + Xcc-8004.5034.1 0.88 +1.0
4,774,764 + Xcc-8004.5034.1 0.88 +0.1
4,774,764 + Xcc-8004.5034.1 0.88 +0.9
4,774,764 + Xcc-8004.5034.1 0.88 -0.4
4,774,764 + Xcc-8004.5034.1 0.88 +0.9
4,774,765 - Xcc-8004.5034.1 0.88 +0.1
4,774,765 - Xcc-8004.5034.1 0.88 -0.6
4,774,765 - Xcc-8004.5034.1 0.88 -0.4
4,774,765 - Xcc-8004.5034.1 0.88 +0.5
4,774,765 - Xcc-8004.5034.1 0.88 +0.3
4,774,765 - Xcc-8004.5034.1 0.88 +0.1
4,774,765 - Xcc-8004.5034.1 0.88 -1.5
4,774,765 - Xcc-8004.5034.1 0.88 +1.8
4,774,765 - Xcc-8004.5034.1 0.88 -0.4
4,775,198 + Xcc-8004.5035.1 0.19 +1.2
4,775,198 + Xcc-8004.5035.1 0.19 +0.9
4,775,198 + Xcc-8004.5035.1 0.19 +0.5
4,775,198 + Xcc-8004.5035.1 0.19 +0.5
4,775,198 + Xcc-8004.5035.1 0.19 +1.4
4,775,198 + Xcc-8004.5035.1 0.19 +0.7
4,775,198 + Xcc-8004.5035.1 0.19 -0.4
4,775,198 + Xcc-8004.5035.1 0.19 +0.1
4,775,198 + Xcc-8004.5035.1 0.19 +1.2
4,775,199 - Xcc-8004.5035.1 0.19 -0.0
4,775,199 - Xcc-8004.5035.1 0.19 -0.3
4,775,199 - Xcc-8004.5035.1 0.19 +0.5
4,775,199 - Xcc-8004.5035.1 0.19 +0.5
4,775,199 - Xcc-8004.5035.1 0.19 +0.3
4,775,303 + Xcc-8004.5035.1 0.26 +0.1
4,775,304 - Xcc-8004.5035.1 0.26 +1.6
4,775,369 + Xcc-8004.5035.1 0.30 +0.2
4,775,369 + Xcc-8004.5035.1 0.30 +1.8
4,775,369 + Xcc-8004.5035.1 0.30 -0.7
4,775,369 + Xcc-8004.5035.1 0.30 +0.8
4,775,369 + Xcc-8004.5035.1 0.30 +0.4
4,775,369 + Xcc-8004.5035.1 0.30 +0.2
4,775,370 - Xcc-8004.5035.1 0.30 -2.2
4,775,370 - Xcc-8004.5035.1 0.30 +0.1
4,775,370 - Xcc-8004.5035.1 0.30 +1.4
4,775,370 - Xcc-8004.5035.1 0.30 +0.3
4,775,370 - Xcc-8004.5035.1 0.30 -1.2
4,775,370 - Xcc-8004.5035.1 0.30 -0.5
4,775,375 + Xcc-8004.5035.1 0.31 -0.5
4,775,375 + Xcc-8004.5035.1 0.31 +1.8
4,775,376 - Xcc-8004.5035.1 0.31 +0.2
4,775,376 - Xcc-8004.5035.1 0.31 -0.2
4,775,376 - Xcc-8004.5035.1 0.31 +0.1
4,775,396 + Xcc-8004.5035.1 0.32 +1.4
4,775,396 + Xcc-8004.5035.1 0.32 -0.4
4,775,753 + Xcc-8004.5035.1 0.55 +0.3
4,775,895 + Xcc-8004.5035.1 0.64 +2.3
4,776,017 + Xcc-8004.5035.1 0.72 +0.6
4,776,018 - Xcc-8004.5035.1 0.72 -0.5
4,776,018 - Xcc-8004.5035.1 0.72 +0.2
4,776,049 + Xcc-8004.5035.1 0.74 -0.2
4,776,074 + Xcc-8004.5035.1 0.75 +0.8
4,776,075 - Xcc-8004.5035.1 0.75 +0.8
4,776,075 - Xcc-8004.5035.1 0.75 -1.0
4,776,384 - -0.6
4,776,491 + +0.3
4,776,491 + -1.4
4,776,491 + +0.1
4,776,491 + -0.3
4,776,492 - +0.6
4,776,511 - -0.2
4,776,511 - -0.8
4,776,569 + -0.7
4,776,569 + +0.7
4,776,570 - +0.8
4,776,570 - +0.4
4,776,587 + +0.9
4,776,623 - +0.4
4,776,745 + Xcc-8004.5036.1 0.14 +0.8
4,776,745 + Xcc-8004.5036.1 0.14 -0.6
4,776,746 - Xcc-8004.5036.1 0.15 +0.2
4,776,746 - Xcc-8004.5036.1 0.15 -1.7
4,776,746 - Xcc-8004.5036.1 0.15 +0.7
4,776,746 - Xcc-8004.5036.1 0.15 -1.3
4,776,746 - Xcc-8004.5036.1 0.15 +0.1
4,776,839 + Xcc-8004.5036.1 0.24 -0.2
4,776,839 + Xcc-8004.5036.1 0.24 +0.4
4,776,839 + Xcc-8004.5036.1 0.24 +0.6
4,776,839 + Xcc-8004.5036.1 0.24 -0.4
4,776,839 + Xcc-8004.5036.1 0.24 +1.6
4,776,840 - Xcc-8004.5036.1 0.24 +1.2
4,776,840 - Xcc-8004.5036.1 0.24 +0.7
4,776,840 - Xcc-8004.5036.1 0.24 -0.4
4,776,840 - Xcc-8004.5036.1 0.24 -0.0
4,776,840 - Xcc-8004.5036.1 0.24 -1.2
4,776,869 + Xcc-8004.5036.1 0.27 +0.2
4,776,869 + Xcc-8004.5036.1 0.27 -1.4
4,776,869 + Xcc-8004.5036.1 0.27 -1.8
4,776,869 + Xcc-8004.5036.1 0.27 -0.0
4,776,869 + Xcc-8004.5036.1 0.27 -1.2
4,776,870 - Xcc-8004.5036.1 0.27 +1.9
4,776,870 - Xcc-8004.5036.1 0.27 -1.7
4,776,870 - Xcc-8004.5036.1 0.27 +0.4
4,776,870 - Xcc-8004.5036.1 0.27 -0.4
4,776,870 - Xcc-8004.5036.1 0.27 -1.2
4,776,872 + Xcc-8004.5036.1 0.27 +1.0
4,776,872 + Xcc-8004.5036.1 0.27 +0.1
4,776,872 + Xcc-8004.5036.1 0.27 -0.8
4,776,873 - Xcc-8004.5036.1 0.27 +0.0
4,776,873 - Xcc-8004.5036.1 0.27 +1.0
4,776,873 - Xcc-8004.5036.1 0.27 +0.1
4,776,873 - Xcc-8004.5036.1 0.27 -0.3
4,776,873 - Xcc-8004.5036.1 0.27 +0.9
4,776,941 + Xcc-8004.5036.1 0.34 -0.0
4,776,942 - Xcc-8004.5036.1 0.34 +0.8
4,777,388 + Xcc-8004.5036.1 0.78 +0.7

Or see this region's nucleotide sequence