Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4992.1 and Xcc-8004.4993.1 are separated by 290 nucleotides Xcc-8004.4993.1 and Xcc-8004.4994.1 are separated by 96 nucleotides Xcc-8004.4994.1 and Xcc-8004.4996.1 are separated by 107 nucleotides
Xcc-8004.4992.1: Xcc-8004.4992.1 - Thymidylate kinase (EC 2.7.4.9), at 4,735,471 to 4,736,127
Xcc-8004.4992.1
Xcc-8004.4993.1: Xcc-8004.4993.1 - hypothetical protein, at 4,736,418 to 4,737,371
Xcc-8004.4993.1
Xcc-8004.4994.1: Xcc-8004.4994.1 - putative; ORF located using Glimmer/Genemark, at 4,737,468 to 4,737,896
Xcc-8004.4994.1
Xcc-8004.4996.1: Xcc-8004.4996.1 - FIG01213627: hypothetical protein, at 4,738,004 to 4,738,393
Xcc-8004.4996.1
Position (kb) 4736
4737
4738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4735.432 kb on + strand at 4735.432 kb on + strand at 4735.437 kb on + strand at 4735.437 kb on + strand at 4735.449 kb on + strand at 4736.105 kb on + strand at 4736.139 kb on + strand at 4736.139 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.196 kb on - strand at 4736.196 kb on - strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.306 kb on - strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.675 kb on - strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.348 kb on - strand at 4737.348 kb on - strand at 4737.348 kb on - strand at 4737.434 kb on + strand at 4737.434 kb on + strand at 4737.435 kb on - strand at 4737.435 kb on - strand at 4737.480 kb on - strand at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.571 kb on - strand, within Xcc-8004.4994.1 at 4737.571 kb on - strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.690 kb on + strand, within Xcc-8004.4994.1 at 4737.690 kb on + strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.968 kb on + strand at 4737.968 kb on + strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 4,735,432 + -0.4 4,735,432 + -0.6 4,735,437 + +0.0 4,735,437 + -0.6 4,735,449 + -0.1 4,736,105 + +0.5 4,736,139 + +0.1 4,736,139 + -1.0 4,736,195 + -0.7 4,736,195 + -1.0 4,736,195 + +0.3 4,736,195 + +0.2 4,736,195 + +0.5 4,736,196 - -1.9 4,736,196 - -0.4 4,736,199 + +0.1 4,736,199 + -0.1 4,736,199 + +0.2 4,736,199 + -0.9 4,736,199 + -0.6 4,736,199 + +0.0 4,736,199 + -0.1 4,736,199 + -0.5 4,736,199 + -0.5 4,736,199 + +0.1 4,736,199 + -1.5 4,736,199 + -1.8 4,736,200 - -0.7 4,736,200 - +1.0 4,736,200 - -0.0 4,736,200 - +0.3 4,736,200 - +0.9 4,736,200 - -2.5 4,736,306 - +0.3 4,736,312 + -1.0 4,736,312 + -0.1 4,736,312 + -0.0 4,736,312 + -0.3 4,736,312 + +0.1 4,736,312 + +0.5 4,736,313 - +0.4 4,736,313 - +0.4 4,736,313 - +1.1 4,736,675 - Xcc-8004.4993.1 0.27 -0.3 4,737,055 + Xcc-8004.4993.1 0.67 -0.6 4,737,055 + Xcc-8004.4993.1 0.67 +0.4 4,737,055 + Xcc-8004.4993.1 0.67 -0.8 4,737,055 + Xcc-8004.4993.1 0.67 +0.7 4,737,055 + Xcc-8004.4993.1 0.67 +0.2 4,737,055 + Xcc-8004.4993.1 0.67 -0.5 4,737,055 + Xcc-8004.4993.1 0.67 -0.4 4,737,055 + Xcc-8004.4993.1 0.67 -1.6 4,737,056 - Xcc-8004.4993.1 0.67 -0.2 4,737,056 - Xcc-8004.4993.1 0.67 -1.4 4,737,056 - Xcc-8004.4993.1 0.67 +0.1 4,737,056 - Xcc-8004.4993.1 0.67 -0.9 4,737,056 - Xcc-8004.4993.1 0.67 -0.4 4,737,056 - Xcc-8004.4993.1 0.67 +0.8 4,737,056 - Xcc-8004.4993.1 0.67 -0.4 4,737,348 - +0.6 4,737,348 - +1.6 4,737,348 - -0.5 4,737,434 + +0.5 4,737,434 + -1.0 4,737,435 - -0.4 4,737,435 - +0.4 4,737,480 - -0.7 4,737,570 + Xcc-8004.4994.1 0.24 -2.9 4,737,570 + Xcc-8004.4994.1 0.24 -0.3 4,737,570 + Xcc-8004.4994.1 0.24 +1.5 4,737,570 + Xcc-8004.4994.1 0.24 +0.2 4,737,570 + Xcc-8004.4994.1 0.24 -0.9 4,737,570 + Xcc-8004.4994.1 0.24 +0.5 4,737,571 - Xcc-8004.4994.1 0.24 +0.2 4,737,571 - Xcc-8004.4994.1 0.24 +0.4 4,737,642 + Xcc-8004.4994.1 0.41 +1.5 4,737,642 + Xcc-8004.4994.1 0.41 +0.8 4,737,642 + Xcc-8004.4994.1 0.41 -0.6 4,737,643 - Xcc-8004.4994.1 0.41 +0.5 4,737,643 - Xcc-8004.4994.1 0.41 -0.1 4,737,643 - Xcc-8004.4994.1 0.41 +1.1 4,737,643 - Xcc-8004.4994.1 0.41 -0.1 4,737,690 + Xcc-8004.4994.1 0.52 +1.3 4,737,690 + Xcc-8004.4994.1 0.52 +0.5 4,737,691 - Xcc-8004.4994.1 0.52 +1.1 4,737,691 - Xcc-8004.4994.1 0.52 -0.7 4,737,691 - Xcc-8004.4994.1 0.52 +0.7 4,737,691 - Xcc-8004.4994.1 0.52 +1.1 4,737,691 - Xcc-8004.4994.1 0.52 -0.6 4,737,691 - Xcc-8004.4994.1 0.52 -0.1 4,737,691 - Xcc-8004.4994.1 0.52 +1.3 4,737,968 + -0.5 4,737,968 + -0.0 4,737,969 - +0.8 4,737,969 - -0.1 4,737,969 - -0.2 4,737,969 - +0.4 4,738,031 + +2.0 4,738,031 + +0.3 4,738,031 + +0.1 4,738,031 + -0.0 4,738,031 + +0.7 4,738,031 + -0.2 4,738,032 - +0.1 4,738,032 - +0.8 4,738,032 - -1.4 4,738,032 - -0.8 4,738,032 - +0.4 4,738,032 - -0.7 4,738,220 + Xcc-8004.4996.1 0.55 -0.4 4,738,220 + Xcc-8004.4996.1 0.55 +2.0 4,738,220 + Xcc-8004.4996.1 0.55 -0.2 4,738,220 + Xcc-8004.4996.1 0.55 +0.6 4,738,220 + Xcc-8004.4996.1 0.55 -0.6 4,738,220 + Xcc-8004.4996.1 0.55 -0.1 4,738,220 + Xcc-8004.4996.1 0.55 +0.0 4,738,220 + Xcc-8004.4996.1 0.55 -0.9 4,738,220 + Xcc-8004.4996.1 0.55 -0.8 4,738,220 + Xcc-8004.4996.1 0.55 +0.1 4,738,220 + Xcc-8004.4996.1 0.55 +0.2 4,738,220 + Xcc-8004.4996.1 0.55 +1.3 4,738,220 + Xcc-8004.4996.1 0.55 +0.7 4,738,221 - Xcc-8004.4996.1 0.56 +0.0 4,738,221 - Xcc-8004.4996.1 0.56 +0.4 4,738,221 - Xcc-8004.4996.1 0.56 +0.7 4,738,221 - Xcc-8004.4996.1 0.56 -0.5 4,738,221 - Xcc-8004.4996.1 0.56 -0.7 4,738,221 - Xcc-8004.4996.1 0.56 +1.0 4,738,221 - Xcc-8004.4996.1 0.56 -0.1 4,738,221 - Xcc-8004.4996.1 0.56 -0.1 4,738,221 - Xcc-8004.4996.1 0.56 -1.8 4,738,221 - Xcc-8004.4996.1 0.56 -0.2
Or see this region's nucleotide sequence