Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19790

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19785 and ABZR86_RS19790 are separated by 102 nucleotidesABZR86_RS19790 and ABZR86_RS19795 overlap by 8 nucleotidesABZR86_RS19795 and ABZR86_RS19800 are separated by 37 nucleotides ABZR86_RS19785: ABZR86_RS19785 - phosphoenolpyruvate--protein phosphotransferase, at 454,885 to 456,615 _RS19785 ABZR86_RS19790: ABZR86_RS19790 - HPr family phosphocarrier protein, at 456,718 to 456,987 _RS19790 ABZR86_RS19795: ABZR86_RS19795 - PTS sugar transporter subunit IIA, at 456,980 to 457,372 _RS19795 ABZR86_RS19800: ABZR86_RS19800 - RNase adapter RapZ, at 457,410 to 458,312 _RS19800 Position (kb) 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1at 456.041 kb on + strand, within ABZR86_RS19785at 456.242 kb on + strand, within ABZR86_RS19785at 456.242 kb on + strand, within ABZR86_RS19785at 456.243 kb on - strand, within ABZR86_RS19785at 456.243 kb on - strand, within ABZR86_RS19785at 456.315 kb on - strand, within ABZR86_RS19785at 456.315 kb on - strand, within ABZR86_RS19785at 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.720 kb on - strandat 456.889 kb on + strand, within ABZR86_RS19790at 456.889 kb on + strand, within ABZR86_RS19790at 456.889 kb on + strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.964 kb on + strandat 456.964 kb on + strandat 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.060 kb on - strand, within ABZR86_RS19795at 457.060 kb on - strand, within ABZR86_RS19795at 457.068 kb on - strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.302 kb on - strand, within ABZR86_RS19795at 457.400 kb on + strandat 457.400 kb on + strandat 457.400 kb on + strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.589 kb on + strand, within ABZR86_RS19800at 457.590 kb on - strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.601 kb on - strand, within ABZR86_RS19800at 457.795 kb on + strand, within ABZR86_RS19800at 457.796 kb on - strand, within ABZR86_RS19800at 457.796 kb on - strand, within ABZR86_RS19800

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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456,041 + ABZR86_RS19785 0.67 -0.4
456,242 + ABZR86_RS19785 0.78 +0.5
456,242 + ABZR86_RS19785 0.78 +0.2
456,243 - ABZR86_RS19785 0.78 -0.5
456,243 - ABZR86_RS19785 0.78 -0.3
456,315 - ABZR86_RS19785 0.83 -0.2
456,315 - ABZR86_RS19785 0.83 +0.0
456,695 + -0.0
456,695 + +0.2
456,695 + -0.6
456,695 + +0.5
456,695 + +0.2
456,695 + -0.1
456,695 + +0.1
456,696 - -0.1
456,696 - +0.3
456,696 - +0.4
456,696 - +0.2
456,696 - -0.0
456,696 - +0.2
456,720 - -0.0
456,889 + ABZR86_RS19790 0.63 +1.2
456,889 + ABZR86_RS19790 0.63 +1.1
456,889 + ABZR86_RS19790 0.63 +0.2
456,890 - ABZR86_RS19790 0.64 -0.2
456,890 - ABZR86_RS19790 0.64 -0.3
456,890 - ABZR86_RS19790 0.64 +0.3
456,890 - ABZR86_RS19790 0.64 +0.6
456,890 - ABZR86_RS19790 0.64 +0.3
456,890 - ABZR86_RS19790 0.64 +0.0
456,964 + -0.2
456,964 + -0.5
457,059 + ABZR86_RS19795 0.20 -1.2
457,059 + ABZR86_RS19795 0.20 +0.8
457,059 + ABZR86_RS19795 0.20 +0.0
457,059 + ABZR86_RS19795 0.20 -0.5
457,059 + ABZR86_RS19795 0.20 +0.1
457,059 + ABZR86_RS19795 0.20 +0.2
457,059 + ABZR86_RS19795 0.20 -1.4
457,059 + ABZR86_RS19795 0.20 +0.5
457,059 + ABZR86_RS19795 0.20 +0.1
457,059 + ABZR86_RS19795 0.20 -0.5
457,060 - ABZR86_RS19795 0.20 -1.2
457,060 - ABZR86_RS19795 0.20 +1.3
457,068 - ABZR86_RS19795 0.22 -0.3
457,301 + ABZR86_RS19795 0.82 +0.2
457,301 + ABZR86_RS19795 0.82 -1.0
457,301 + ABZR86_RS19795 0.82 -1.8
457,301 + ABZR86_RS19795 0.82 +0.4
457,301 + ABZR86_RS19795 0.82 -0.8
457,302 - ABZR86_RS19795 0.82 -0.9
457,400 + -0.6
457,400 + +0.6
457,400 + -1.0
457,401 - +0.1
457,401 - -0.2
457,401 - -0.3
457,401 - -0.8
457,401 - +0.1
457,401 - -0.7
457,486 + +0.3
457,486 + -0.4
457,486 + -0.5
457,487 - -0.8
457,487 - -0.4
457,487 - -0.9
457,534 + ABZR86_RS19800 0.14 -0.3
457,534 + ABZR86_RS19800 0.14 -0.0
457,534 + ABZR86_RS19800 0.14 -0.4
457,534 + ABZR86_RS19800 0.14 -0.7
457,534 + ABZR86_RS19800 0.14 -2.6
457,535 - ABZR86_RS19800 0.14 -1.5
457,535 - ABZR86_RS19800 0.14 -1.1
457,535 - ABZR86_RS19800 0.14 -0.7
457,535 - ABZR86_RS19800 0.14 -0.5
457,535 - ABZR86_RS19800 0.14 -0.7
457,535 - ABZR86_RS19800 0.14 -2.4
457,535 - ABZR86_RS19800 0.14 -1.0
457,535 - ABZR86_RS19800 0.14 -0.1
457,535 - ABZR86_RS19800 0.14 -0.1
457,535 - ABZR86_RS19800 0.14 -0.3
457,535 - ABZR86_RS19800 0.14 +0.1
457,589 + ABZR86_RS19800 0.20 +1.2
457,590 - ABZR86_RS19800 0.20 -0.1
457,600 + ABZR86_RS19800 0.21 -0.3
457,600 + ABZR86_RS19800 0.21 -1.4
457,600 + ABZR86_RS19800 0.21 -3.1
457,601 - ABZR86_RS19800 0.21 -0.1
457,795 + ABZR86_RS19800 0.43 -0.3
457,796 - ABZR86_RS19800 0.43 +0.1
457,796 - ABZR86_RS19800 0.43 -0.6

Or see this region's nucleotide sequence