Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13535 and ABZR86_RS13540 overlap by 4 nucleotides ABZR86_RS13540 and ABZR86_RS13545 overlap by 4 nucleotides ABZR86_RS13545 and ABZR86_RS13550 are separated by 13 nucleotides
ABZR86_RS13535: ABZR86_RS13535 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 3,031,360 to 3,032,544
_RS13535
ABZR86_RS13540: ABZR86_RS13540 - beta-ketoacyl synthase chain length factor, at 3,032,541 to 3,033,341
_RS13540
ABZR86_RS13545: ABZR86_RS13545 - glycosyltransferase family 2 protein, at 3,033,338 to 3,034,102
_RS13545
ABZR86_RS13550: ABZR86_RS13550 - phosphotransferase, at 3,034,116 to 3,034,547
_RS13550
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3032.092 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.468 kb on + strand at 3032.468 kb on + strand at 3032.468 kb on + strand at 3032.468 kb on + strand at 3032.468 kb on + strand at 3032.468 kb on + strand at 3032.469 kb on - strand at 3032.469 kb on - strand at 3032.469 kb on - strand at 3032.559 kb on + strand at 3032.559 kb on + strand at 3032.559 kb on + strand at 3032.560 kb on - strand at 3032.560 kb on - strand at 3032.560 kb on - strand at 3032.560 kb on - strand at 3032.820 kb on + strand, within ABZR86_RS13540 at 3032.820 kb on + strand, within ABZR86_RS13540 at 3032.820 kb on + strand, within ABZR86_RS13540 at 3032.820 kb on + strand, within ABZR86_RS13540 at 3032.820 kb on + strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.821 kb on - strand, within ABZR86_RS13540 at 3032.948 kb on - strand, within ABZR86_RS13540 at 3032.948 kb on - strand, within ABZR86_RS13540 at 3033.213 kb on + strand, within ABZR86_RS13540 at 3033.213 kb on + strand, within ABZR86_RS13540 at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.366 kb on + strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.367 kb on - strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.370 kb on + strand at 3033.371 kb on - strand at 3033.998 kb on + strand, within ABZR86_RS13545 at 3033.998 kb on + strand, within ABZR86_RS13545 at 3033.998 kb on + strand, within ABZR86_RS13545 at 3033.998 kb on + strand, within ABZR86_RS13545 at 3033.998 kb on + strand, within ABZR86_RS13545 at 3033.999 kb on - strand, within ABZR86_RS13545 at 3033.999 kb on - strand, within ABZR86_RS13545 at 3033.999 kb on - strand, within ABZR86_RS13545 at 3033.999 kb on - strand, within ABZR86_RS13545 at 3034.022 kb on + strand, within ABZR86_RS13545 at 3034.043 kb on + strand at 3034.044 kb on - strand at 3034.044 kb on - strand at 3034.044 kb on - strand at 3034.126 kb on + strand at 3034.126 kb on + strand at 3034.126 kb on + strand at 3034.126 kb on + strand at 3034.127 kb on - strand at 3034.127 kb on - strand at 3034.186 kb on + strand, within ABZR86_RS13550 at 3034.309 kb on - strand, within ABZR86_RS13550
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 3,032,092 + ABZR86_RS13535 0.62 +0.0 3,032,209 + ABZR86_RS13535 0.72 -0.7 3,032,209 + ABZR86_RS13535 0.72 +0.2 3,032,209 + ABZR86_RS13535 0.72 -1.5 3,032,209 + ABZR86_RS13535 0.72 +0.4 3,032,209 + ABZR86_RS13535 0.72 +0.1 3,032,209 + ABZR86_RS13535 0.72 +0.3 3,032,209 + ABZR86_RS13535 0.72 +0.1 3,032,209 + ABZR86_RS13535 0.72 -0.1 3,032,210 - ABZR86_RS13535 0.72 -0.1 3,032,210 - ABZR86_RS13535 0.72 -0.4 3,032,210 - ABZR86_RS13535 0.72 -0.6 3,032,210 - ABZR86_RS13535 0.72 +0.3 3,032,210 - ABZR86_RS13535 0.72 -0.4 3,032,210 - ABZR86_RS13535 0.72 -0.9 3,032,468 + -0.1 3,032,468 + -0.6 3,032,468 + +0.3 3,032,468 + +0.3 3,032,468 + -0.1 3,032,468 + -0.1 3,032,469 - -0.1 3,032,469 - +1.2 3,032,469 - +0.8 3,032,559 + +0.6 3,032,559 + +0.4 3,032,559 + -0.5 3,032,560 - -0.2 3,032,560 - -0.6 3,032,560 - -0.6 3,032,560 - +0.3 3,032,820 + ABZR86_RS13540 0.35 -0.0 3,032,820 + ABZR86_RS13540 0.35 -0.3 3,032,820 + ABZR86_RS13540 0.35 +0.2 3,032,820 + ABZR86_RS13540 0.35 -1.8 3,032,820 + ABZR86_RS13540 0.35 +0.7 3,032,821 - ABZR86_RS13540 0.35 -0.6 3,032,821 - ABZR86_RS13540 0.35 +1.3 3,032,821 - ABZR86_RS13540 0.35 -0.3 3,032,821 - ABZR86_RS13540 0.35 -0.2 3,032,821 - ABZR86_RS13540 0.35 +1.0 3,032,821 - ABZR86_RS13540 0.35 -0.3 3,032,821 - ABZR86_RS13540 0.35 +0.3 3,032,821 - ABZR86_RS13540 0.35 +0.3 3,032,821 - ABZR86_RS13540 0.35 +1.7 3,032,948 - ABZR86_RS13540 0.51 +0.4 3,032,948 - ABZR86_RS13540 0.51 +0.1 3,033,213 + ABZR86_RS13540 0.84 +0.4 3,033,213 + ABZR86_RS13540 0.84 +0.2 3,033,366 + -1.3 3,033,366 + +0.3 3,033,366 + -0.1 3,033,366 + -0.1 3,033,366 + -0.1 3,033,366 + -0.6 3,033,366 + +0.2 3,033,366 + +0.6 3,033,366 + -0.4 3,033,366 + +0.3 3,033,366 + +0.2 3,033,366 + +0.2 3,033,366 + +0.0 3,033,366 + -0.2 3,033,366 + -1.2 3,033,367 - +0.5 3,033,367 - +0.2 3,033,367 - -0.3 3,033,367 - +0.0 3,033,367 - +1.9 3,033,367 - +0.4 3,033,367 - -0.3 3,033,367 - +0.6 3,033,367 - -0.6 3,033,367 - -0.2 3,033,367 - +0.7 3,033,367 - +0.4 3,033,367 - +0.2 3,033,367 - -0.0 3,033,370 + -0.2 3,033,370 + -0.3 3,033,370 + -0.3 3,033,370 + +0.5 3,033,370 + -0.5 3,033,370 + +0.3 3,033,370 + +0.3 3,033,371 - -0.1 3,033,998 + ABZR86_RS13545 0.86 +0.1 3,033,998 + ABZR86_RS13545 0.86 +0.4 3,033,998 + ABZR86_RS13545 0.86 +0.1 3,033,998 + ABZR86_RS13545 0.86 +0.7 3,033,998 + ABZR86_RS13545 0.86 +0.2 3,033,999 - ABZR86_RS13545 0.86 -0.8 3,033,999 - ABZR86_RS13545 0.86 -0.0 3,033,999 - ABZR86_RS13545 0.86 -0.3 3,033,999 - ABZR86_RS13545 0.86 -0.7 3,034,022 + ABZR86_RS13545 0.89 +0.5 3,034,043 + +0.3 3,034,044 - -0.9 3,034,044 - -1.0 3,034,044 - -0.4 3,034,126 + +0.3 3,034,126 + -0.3 3,034,126 + +0.7 3,034,126 + -0.9 3,034,127 - +0.8 3,034,127 - +0.7 3,034,186 + ABZR86_RS13550 0.16 +0.2 3,034,309 - ABZR86_RS13550 0.45 +0.2
Or see this region's nucleotide sequence