Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08565

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08555 and ABZR86_RS08560 are separated by 59 nucleotidesABZR86_RS08560 and ABZR86_RS08565 are separated by 165 nucleotidesABZR86_RS08565 and ABZR86_RS08570 are separated by 77 nucleotides ABZR86_RS08555: ABZR86_RS08555 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,914,915 to 1,915,172 _RS08555 ABZR86_RS08560: ABZR86_RS08560 - YidB family protein, at 1,915,232 to 1,915,681 _RS08560 ABZR86_RS08565: ABZR86_RS08565 - peptidylprolyl isomerase, at 1,915,847 to 1,916,356 _RS08565 ABZR86_RS08570: ABZR86_RS08570 - 3-hydroxybutyrate oligomer hydrolase family protein, at 1,916,434 to 1,918,269 _RS08570 Position (kb) 1915 1916 1917Strain fitness (log2 ratio) -1 0 1at 1914.875 kb on + strandat 1914.875 kb on + strandat 1914.875 kb on + strandat 1914.875 kb on + strandat 1914.887 kb on + strandat 1914.887 kb on + strandat 1914.888 kb on - strandat 1914.914 kb on + strandat 1914.914 kb on + strandat 1914.915 kb on - strandat 1914.915 kb on - strandat 1914.931 kb on + strandat 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.047 kb on + strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.048 kb on - strand, within ABZR86_RS08555at 1915.138 kb on - strand, within ABZR86_RS08555at 1915.138 kb on - strand, within ABZR86_RS08555at 1915.138 kb on - strand, within ABZR86_RS08555at 1915.233 kb on + strandat 1915.233 kb on + strandat 1915.234 kb on - strandat 1915.645 kb on + strandat 1915.709 kb on + strandat 1915.710 kb on - strandat 1915.746 kb on + strandat 1915.747 kb on - strandat 1915.747 kb on - strandat 1915.747 kb on - strandat 1915.824 kb on + strandat 1915.824 kb on + strandat 1915.825 kb on - strandat 1915.825 kb on - strandat 1916.154 kb on + strand, within ABZR86_RS08565at 1916.154 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.241 kb on + strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.242 kb on - strand, within ABZR86_RS08565at 1916.342 kb on + strandat 1916.342 kb on + strandat 1916.342 kb on + strandat 1916.342 kb on + strandat 1916.343 kb on - strandat 1916.343 kb on - strandat 1916.367 kb on + strandat 1916.368 kb on - strandat 1916.368 kb on - strandat 1916.368 kb on - strandat 1916.418 kb on + strandat 1916.418 kb on + strandat 1916.418 kb on + strandat 1916.419 kb on - strandat 1916.419 kb on - strandat 1916.532 kb on - strandat 1916.564 kb on + strandat 1916.564 kb on + strandat 1916.565 kb on - strandat 1916.654 kb on + strand, within ABZR86_RS08570at 1916.693 kb on + strand, within ABZR86_RS08570at 1916.693 kb on + strand, within ABZR86_RS08570at 1916.693 kb on + strand, within ABZR86_RS08570at 1916.694 kb on - strand, within ABZR86_RS08570at 1917.140 kb on + strand, within ABZR86_RS08570at 1917.141 kb on - strand, within ABZR86_RS08570at 1917.141 kb on - strand, within ABZR86_RS08570at 1917.320 kb on + strand, within ABZR86_RS08570at 1917.320 kb on + strand, within ABZR86_RS08570at 1917.320 kb on + strand, within ABZR86_RS08570at 1917.321 kb on - strand, within ABZR86_RS08570at 1917.327 kb on - strand, within ABZR86_RS08570

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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1,914,875 + -0.0
1,914,875 + -0.5
1,914,875 + -0.4
1,914,875 + +0.1
1,914,887 + -0.3
1,914,887 + +0.5
1,914,888 - +1.0
1,914,914 + +0.6
1,914,914 + +0.1
1,914,915 - -1.3
1,914,915 - -0.5
1,914,931 + +0.6
1,915,047 + ABZR86_RS08555 0.51 -0.5
1,915,047 + ABZR86_RS08555 0.51 +0.0
1,915,047 + ABZR86_RS08555 0.51 +1.1
1,915,047 + ABZR86_RS08555 0.51 +0.0
1,915,047 + ABZR86_RS08555 0.51 +0.0
1,915,047 + ABZR86_RS08555 0.51 -0.0
1,915,047 + ABZR86_RS08555 0.51 +0.2
1,915,048 - ABZR86_RS08555 0.52 +0.8
1,915,048 - ABZR86_RS08555 0.52 -0.7
1,915,048 - ABZR86_RS08555 0.52 +0.0
1,915,048 - ABZR86_RS08555 0.52 +0.0
1,915,048 - ABZR86_RS08555 0.52 +0.2
1,915,048 - ABZR86_RS08555 0.52 +0.3
1,915,048 - ABZR86_RS08555 0.52 +0.9
1,915,138 - ABZR86_RS08555 0.86 -0.5
1,915,138 - ABZR86_RS08555 0.86 -0.3
1,915,138 - ABZR86_RS08555 0.86 -0.4
1,915,233 + +0.6
1,915,233 + -0.0
1,915,234 - +0.1
1,915,645 + +0.3
1,915,709 + +0.2
1,915,710 - -0.9
1,915,746 + +1.0
1,915,747 - -0.3
1,915,747 - +0.1
1,915,747 - +0.4
1,915,824 + -0.4
1,915,824 + +1.4
1,915,825 - +0.2
1,915,825 - -0.1
1,916,154 + ABZR86_RS08565 0.60 -0.5
1,916,154 + ABZR86_RS08565 0.60 -0.1
1,916,241 + ABZR86_RS08565 0.77 -0.5
1,916,241 + ABZR86_RS08565 0.77 +0.1
1,916,241 + ABZR86_RS08565 0.77 +0.6
1,916,241 + ABZR86_RS08565 0.77 +1.3
1,916,241 + ABZR86_RS08565 0.77 -0.2
1,916,241 + ABZR86_RS08565 0.77 -0.0
1,916,241 + ABZR86_RS08565 0.77 -0.2
1,916,241 + ABZR86_RS08565 0.77 +0.8
1,916,242 - ABZR86_RS08565 0.77 +0.0
1,916,242 - ABZR86_RS08565 0.77 +0.2
1,916,242 - ABZR86_RS08565 0.77 +0.7
1,916,242 - ABZR86_RS08565 0.77 +0.3
1,916,242 - ABZR86_RS08565 0.77 -0.2
1,916,242 - ABZR86_RS08565 0.77 -0.5
1,916,242 - ABZR86_RS08565 0.77 +1.0
1,916,242 - ABZR86_RS08565 0.77 +1.0
1,916,342 + -0.3
1,916,342 + -0.1
1,916,342 + -0.2
1,916,342 + +1.3
1,916,343 - +0.4
1,916,343 - -0.4
1,916,367 + -0.7
1,916,368 - -0.6
1,916,368 - +0.1
1,916,368 - -0.1
1,916,418 + +1.3
1,916,418 + +0.6
1,916,418 + +0.4
1,916,419 - +1.3
1,916,419 - +0.2
1,916,532 - +0.3
1,916,564 + -0.4
1,916,564 + -0.1
1,916,565 - +0.2
1,916,654 + ABZR86_RS08570 0.12 +1.3
1,916,693 + ABZR86_RS08570 0.14 +0.0
1,916,693 + ABZR86_RS08570 0.14 +0.4
1,916,693 + ABZR86_RS08570 0.14 -0.2
1,916,694 - ABZR86_RS08570 0.14 +0.0
1,917,140 + ABZR86_RS08570 0.38 +0.1
1,917,141 - ABZR86_RS08570 0.39 -0.6
1,917,141 - ABZR86_RS08570 0.39 -0.3
1,917,320 + ABZR86_RS08570 0.48 +0.5
1,917,320 + ABZR86_RS08570 0.48 +0.0
1,917,320 + ABZR86_RS08570 0.48 +0.5
1,917,321 - ABZR86_RS08570 0.48 -0.1
1,917,327 - ABZR86_RS08570 0.49 +0.2

Or see this region's nucleotide sequence