Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06160

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06155 and ABZR86_RS06160 are separated by 7 nucleotidesABZR86_RS06160 and ABZR86_RS06165 are separated by 217 nucleotidesABZR86_RS06165 and ABZR86_RS06170 are separated by 399 nucleotides ABZR86_RS06155: ABZR86_RS06155 - aminodeoxychorismate synthase component I, at 1,380,256 to 1,381,605 _RS06155 ABZR86_RS06160: ABZR86_RS06160 - beta-ketoacyl-ACP synthase II, at 1,381,613 to 1,382,851 _RS06160 ABZR86_RS06165: ABZR86_RS06165 - acyl carrier protein, at 1,383,069 to 1,383,308 _RS06165 ABZR86_RS06170: ABZR86_RS06170 - 3-oxoacyl-ACP reductase FabG, at 1,383,708 to 1,384,451 _RS06170 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -2 -1 0 1at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.932 kb on + strand, within ABZR86_RS06155at 1381.003 kb on - strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.293 kb on - strand, within ABZR86_RS06155at 1381.293 kb on - strand, within ABZR86_RS06155at 1382.934 kb on - strandat 1382.934 kb on - strandat 1382.956 kb on + strandat 1382.956 kb on + strandat 1382.964 kb on - strandat 1383.350 kb on - strandat 1383.350 kb on - strandat 1383.581 kb on + strandat 1383.581 kb on + strandat 1383.709 kb on + strandat 1383.709 kb on + strandat 1383.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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1,380,623 + ABZR86_RS06155 0.27 +0.0
1,380,623 + ABZR86_RS06155 0.27 -1.5
1,380,623 + ABZR86_RS06155 0.27 -1.0
1,380,623 + ABZR86_RS06155 0.27 +0.5
1,380,623 + ABZR86_RS06155 0.27 -0.0
1,380,623 + ABZR86_RS06155 0.27 -0.2
1,380,623 + ABZR86_RS06155 0.27 +0.3
1,380,624 - ABZR86_RS06155 0.27 +0.2
1,380,624 - ABZR86_RS06155 0.27 +0.6
1,380,624 - ABZR86_RS06155 0.27 +0.0
1,380,624 - ABZR86_RS06155 0.27 -0.1
1,380,624 - ABZR86_RS06155 0.27 -0.3
1,380,624 - ABZR86_RS06155 0.27 +0.8
1,380,624 - ABZR86_RS06155 0.27 -0.3
1,380,624 - ABZR86_RS06155 0.27 +0.0
1,380,624 - ABZR86_RS06155 0.27 -0.5
1,380,932 + ABZR86_RS06155 0.50 +0.5
1,381,003 - ABZR86_RS06155 0.55 -2.4
1,381,292 + ABZR86_RS06155 0.77 -0.6
1,381,292 + ABZR86_RS06155 0.77 -0.3
1,381,292 + ABZR86_RS06155 0.77 -0.4
1,381,292 + ABZR86_RS06155 0.77 -0.7
1,381,293 - ABZR86_RS06155 0.77 +0.7
1,381,293 - ABZR86_RS06155 0.77 +0.3
1,382,934 - +0.0
1,382,934 - +0.2
1,382,956 + -1.0
1,382,956 + -0.9
1,382,964 - +0.0
1,383,350 - -0.7
1,383,350 - +0.6
1,383,581 + -0.4
1,383,581 + +0.1
1,383,709 + +0.3
1,383,709 + +1.0
1,383,719 - +1.1

Or see this region's nucleotide sequence