Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01180 and ABZR86_RS01185 are separated by 41 nucleotides ABZR86_RS01185 and ABZR86_RS01190 are separated by 208 nucleotides
ABZR86_RS01180: ABZR86_RS01180 - ESPR-type extended signal peptide-containing protein, at 237,924 to 244,532
_RS01180
ABZR86_RS01185: ABZR86_RS01185 - OmpA family protein, at 244,574 to 245,395
_RS01185
ABZR86_RS01190: ABZR86_RS01190 - alginate lyase family protein, at 245,604 to 246,806
_RS01190
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1 at 243.738 kb on + strand, within ABZR86_RS01180 at 243.739 kb on - strand, within ABZR86_RS01180 at 243.739 kb on - strand, within ABZR86_RS01180 at 243.755 kb on + strand, within ABZR86_RS01180 at 243.755 kb on + strand, within ABZR86_RS01180 at 243.756 kb on - strand, within ABZR86_RS01180 at 243.870 kb on + strand, within ABZR86_RS01180 at 243.900 kb on + strand at 243.901 kb on - strand at 243.901 kb on - strand at 243.981 kb on + strand at 243.981 kb on + strand at 243.981 kb on + strand at 244.249 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.455 kb on + strand at 244.579 kb on + strand at 244.851 kb on - strand, within ABZR86_RS01185 at 244.851 kb on - strand, within ABZR86_RS01185 at 244.943 kb on + strand, within ABZR86_RS01185 at 244.944 kb on - strand, within ABZR86_RS01185 at 245.192 kb on + strand, within ABZR86_RS01185 at 245.192 kb on + strand, within ABZR86_RS01185 at 245.193 kb on - strand, within ABZR86_RS01185 at 245.193 kb on - strand, within ABZR86_RS01185 at 245.394 kb on - strand at 245.467 kb on - strand at 245.467 kb on - strand at 245.904 kb on + strand, within ABZR86_RS01190 at 245.904 kb on + strand, within ABZR86_RS01190 at 245.904 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.073 kb on - strand, within ABZR86_RS01190 at 246.174 kb on + strand, within ABZR86_RS01190 at 246.174 kb on + strand, within ABZR86_RS01190 at 246.228 kb on + strand, within ABZR86_RS01190 at 246.229 kb on - strand, within ABZR86_RS01190 at 246.254 kb on + strand, within ABZR86_RS01190 at 246.255 kb on - strand, within ABZR86_RS01190 at 246.303 kb on + strand, within ABZR86_RS01190 at 246.321 kb on + strand, within ABZR86_RS01190 at 246.321 kb on + strand, within ABZR86_RS01190
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 243,738 + ABZR86_RS01180 0.88 -0.3 243,739 - ABZR86_RS01180 0.88 +0.3 243,739 - ABZR86_RS01180 0.88 -0.6 243,755 + ABZR86_RS01180 0.88 +0.2 243,755 + ABZR86_RS01180 0.88 +0.4 243,756 - ABZR86_RS01180 0.88 +0.1 243,870 + ABZR86_RS01180 0.90 -0.0 243,900 + -0.3 243,901 - +0.1 243,901 - -0.2 243,981 + +0.4 243,981 + +0.5 243,981 + -0.2 244,249 - +0.1 244,357 - +0.2 244,357 - +0.3 244,357 - +0.4 244,357 - -0.3 244,455 + +0.6 244,579 + +0.5 244,851 - ABZR86_RS01185 0.34 -0.6 244,851 - ABZR86_RS01185 0.34 -0.1 244,943 + ABZR86_RS01185 0.45 -0.7 244,944 - ABZR86_RS01185 0.45 -0.4 245,192 + ABZR86_RS01185 0.75 +0.0 245,192 + ABZR86_RS01185 0.75 +0.6 245,193 - ABZR86_RS01185 0.75 +0.0 245,193 - ABZR86_RS01185 0.75 -0.5 245,394 - -0.0 245,467 - -0.0 245,467 - -0.3 245,904 + ABZR86_RS01190 0.25 -1.0 245,904 + ABZR86_RS01190 0.25 +1.2 245,904 + ABZR86_RS01190 0.25 +0.1 246,072 + ABZR86_RS01190 0.39 +0.3 246,072 + ABZR86_RS01190 0.39 +1.0 246,072 + ABZR86_RS01190 0.39 -0.5 246,073 - ABZR86_RS01190 0.39 -0.3 246,174 + ABZR86_RS01190 0.47 -0.2 246,174 + ABZR86_RS01190 0.47 +0.4 246,228 + ABZR86_RS01190 0.52 +0.0 246,229 - ABZR86_RS01190 0.52 -0.4 246,254 + ABZR86_RS01190 0.54 -0.5 246,255 - ABZR86_RS01190 0.54 +0.1 246,303 + ABZR86_RS01190 0.58 +0.2 246,321 + ABZR86_RS01190 0.60 -0.3 246,321 + ABZR86_RS01190 0.60 -0.5
Or see this region's nucleotide sequence