Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00465

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00460 and ABZR86_RS00465 are separated by 217 nucleotidesABZR86_RS00465 and ABZR86_RS00470 are separated by 140 nucleotidesABZR86_RS00470 and ABZR86_RS00475 overlap by 4 nucleotides ABZR86_RS00460: ABZR86_RS00460 - nicotinate phosphoribosyltransferase, at 88,043 to 89,236 _RS00460 ABZR86_RS00465: ABZR86_RS00465 - MetQ/NlpA family ABC transporter substrate-binding protein, at 89,454 to 90,257 _RS00465 ABZR86_RS00470: ABZR86_RS00470 - methionine ABC transporter permease, at 90,398 to 91,087 _RS00470 ABZR86_RS00475: ABZR86_RS00475 - methionine ABC transporter ATP-binding protein, at 91,084 to 92,094 _RS00475 Position (kb) 89 90 91Strain fitness (log2 ratio) -1 0 1at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.812 kb on - strand, within ABZR86_RS00460at 88.812 kb on - strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 89.006 kb on + strand, within ABZR86_RS00460at 89.178 kb on - strandat 89.186 kb on + strandat 89.186 kb on + strandat 89.186 kb on + strandat 89.187 kb on - strandat 89.249 kb on - strandat 89.249 kb on - strandat 89.249 kb on - strandat 89.256 kb on + strandat 89.257 kb on - strandat 89.303 kb on + strandat 89.304 kb on - strandat 89.482 kb on + strandat 89.483 kb on - strandat 89.581 kb on + strand, within ABZR86_RS00465at 89.581 kb on + strand, within ABZR86_RS00465at 89.582 kb on - strand, within ABZR86_RS00465at 89.582 kb on - strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.657 kb on - strand, within ABZR86_RS00465at 89.663 kb on + strand, within ABZR86_RS00465at 89.664 kb on - strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.992 kb on + strand, within ABZR86_RS00465at 90.010 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.055 kb on - strand, within ABZR86_RS00465at 90.058 kb on + strand, within ABZR86_RS00465at 90.058 kb on + strand, within ABZR86_RS00465at 90.296 kb on + strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.297 kb on - strandat 90.298 kb on + strandat 90.299 kb on - strandat 90.314 kb on + strandat 90.335 kb on + strandat 90.377 kb on + strandat 90.377 kb on + strandat 90.377 kb on + strandat 90.378 kb on - strandat 90.378 kb on - strandat 90.384 kb on + strandat 90.495 kb on + strand, within ABZR86_RS00470at 90.496 kb on - strand, within ABZR86_RS00470at 90.496 kb on - strand, within ABZR86_RS00470at 90.496 kb on - strand, within ABZR86_RS00470at 90.507 kb on + strand, within ABZR86_RS00470at 90.507 kb on + strand, within ABZR86_RS00470at 90.517 kb on - strand, within ABZR86_RS00470at 90.522 kb on + strand, within ABZR86_RS00470at 90.523 kb on - strand, within ABZR86_RS00470at 90.529 kb on - strand, within ABZR86_RS00470at 90.529 kb on - strand, within ABZR86_RS00470at 90.577 kb on + strand, within ABZR86_RS00470at 90.577 kb on + strand, within ABZR86_RS00470at 90.577 kb on + strand, within ABZR86_RS00470at 90.578 kb on - strand, within ABZR86_RS00470at 90.578 kb on - strand, within ABZR86_RS00470at 90.819 kb on + strand, within ABZR86_RS00470at 90.819 kb on + strand, within ABZR86_RS00470at 90.819 kb on + strand, within ABZR86_RS00470at 90.820 kb on - strand, within ABZR86_RS00470at 90.820 kb on - strand, within ABZR86_RS00470at 90.820 kb on - strand, within ABZR86_RS00470at 90.820 kb on - strand, within ABZR86_RS00470at 90.900 kb on + strand, within ABZR86_RS00470at 90.901 kb on - strand, within ABZR86_RS00470at 90.942 kb on + strand, within ABZR86_RS00470at 90.943 kb on - strand, within ABZR86_RS00470at 90.980 kb on - strand, within ABZR86_RS00470at 91.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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88,698 - ABZR86_RS00460 0.55 -0.6
88,698 - ABZR86_RS00460 0.55 -0.4
88,698 - ABZR86_RS00460 0.55 +0.4
88,698 - ABZR86_RS00460 0.55 +0.5
88,812 - ABZR86_RS00460 0.64 +0.1
88,812 - ABZR86_RS00460 0.64 +0.0
88,847 + ABZR86_RS00460 0.67 +0.3
88,847 + ABZR86_RS00460 0.67 +0.8
88,847 + ABZR86_RS00460 0.67 -0.9
88,847 + ABZR86_RS00460 0.67 -0.7
88,847 + ABZR86_RS00460 0.67 -0.3
88,847 + ABZR86_RS00460 0.67 -0.6
88,847 + ABZR86_RS00460 0.67 -0.1
88,847 + ABZR86_RS00460 0.67 +1.0
88,848 - ABZR86_RS00460 0.67 -0.8
88,848 - ABZR86_RS00460 0.67 -0.6
88,848 - ABZR86_RS00460 0.67 +0.8
88,848 - ABZR86_RS00460 0.67 -0.3
88,848 - ABZR86_RS00460 0.67 +0.1
88,848 - ABZR86_RS00460 0.67 -0.8
88,848 - ABZR86_RS00460 0.67 +0.1
88,848 - ABZR86_RS00460 0.67 -0.1
88,848 - ABZR86_RS00460 0.67 -0.9
88,848 - ABZR86_RS00460 0.67 +0.2
89,006 + ABZR86_RS00460 0.81 -0.2
89,178 - -0.2
89,186 + -0.8
89,186 + -0.0
89,186 + +1.2
89,187 - -0.6
89,249 - -0.3
89,249 - +0.1
89,249 - +0.3
89,256 + -0.1
89,257 - +0.4
89,303 + -0.9
89,304 - -0.4
89,482 + -0.6
89,483 - -0.6
89,581 + ABZR86_RS00465 0.16 -0.4
89,581 + ABZR86_RS00465 0.16 -0.3
89,582 - ABZR86_RS00465 0.16 +0.1
89,582 - ABZR86_RS00465 0.16 -0.6
89,656 + ABZR86_RS00465 0.25 -0.4
89,656 + ABZR86_RS00465 0.25 +0.1
89,656 + ABZR86_RS00465 0.25 +0.4
89,656 + ABZR86_RS00465 0.25 -0.9
89,657 - ABZR86_RS00465 0.25 -0.3
89,663 + ABZR86_RS00465 0.26 +0.1
89,664 - ABZR86_RS00465 0.26 -0.0
89,914 + ABZR86_RS00465 0.57 -0.6
89,914 + ABZR86_RS00465 0.57 +0.4
89,914 + ABZR86_RS00465 0.57 -0.2
89,992 + ABZR86_RS00465 0.67 -0.6
90,010 + ABZR86_RS00465 0.69 -0.1
90,054 + ABZR86_RS00465 0.75 +0.9
90,054 + ABZR86_RS00465 0.75 -1.0
90,054 + ABZR86_RS00465 0.75 +0.1
90,054 + ABZR86_RS00465 0.75 +0.9
90,054 + ABZR86_RS00465 0.75 -0.3
90,054 + ABZR86_RS00465 0.75 -0.0
90,054 + ABZR86_RS00465 0.75 +0.2
90,055 - ABZR86_RS00465 0.75 -0.4
90,058 + ABZR86_RS00465 0.75 -0.0
90,058 + ABZR86_RS00465 0.75 +0.6
90,296 + -0.9
90,297 - -1.6
90,297 - -1.0
90,297 - +0.2
90,297 - -0.1
90,297 - -0.5
90,297 - -1.1
90,297 - -0.4
90,298 + -0.2
90,299 - +0.0
90,314 + -0.5
90,335 + +0.3
90,377 + +0.4
90,377 + -0.2
90,377 + +0.7
90,378 - -0.4
90,378 - -0.6
90,384 + -0.5
90,495 + ABZR86_RS00470 0.14 -0.5
90,496 - ABZR86_RS00470 0.14 -0.3
90,496 - ABZR86_RS00470 0.14 +0.3
90,496 - ABZR86_RS00470 0.14 -0.2
90,507 + ABZR86_RS00470 0.16 -0.9
90,507 + ABZR86_RS00470 0.16 +0.2
90,517 - ABZR86_RS00470 0.17 -0.3
90,522 + ABZR86_RS00470 0.18 +0.3
90,523 - ABZR86_RS00470 0.18 +0.0
90,529 - ABZR86_RS00470 0.19 +1.4
90,529 - ABZR86_RS00470 0.19 -0.6
90,577 + ABZR86_RS00470 0.26 -0.6
90,577 + ABZR86_RS00470 0.26 -0.2
90,577 + ABZR86_RS00470 0.26 -0.2
90,578 - ABZR86_RS00470 0.26 +0.3
90,578 - ABZR86_RS00470 0.26 -0.4
90,819 + ABZR86_RS00470 0.61 -0.9
90,819 + ABZR86_RS00470 0.61 +0.0
90,819 + ABZR86_RS00470 0.61 -0.4
90,820 - ABZR86_RS00470 0.61 +0.3
90,820 - ABZR86_RS00470 0.61 -0.0
90,820 - ABZR86_RS00470 0.61 -0.9
90,820 - ABZR86_RS00470 0.61 -0.4
90,900 + ABZR86_RS00470 0.73 -0.9
90,901 - ABZR86_RS00470 0.73 -0.4
90,942 + ABZR86_RS00470 0.79 -1.1
90,943 - ABZR86_RS00470 0.79 -0.5
90,980 - ABZR86_RS00470 0.84 +0.1
91,182 - -0.3

Or see this region's nucleotide sequence