Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3715 and Shewana3_3716 are separated by 127 nucleotides Shewana3_3716 and Shewana3_3717 are separated by 143 nucleotides Shewana3_3717 and Shewana3_3718 are separated by 168 nucleotides Shewana3_3718 and Shewana3_3719 are separated by 15 nucleotides
Shewana3_3715: Shewana3_3715 - TonB-dependent receptor (RefSeq), at 4,457,096 to 4,459,534
_3715
Shewana3_3716: Shewana3_3716 - hypothetical protein (RefSeq), at 4,459,662 to 4,460,123
_3716
Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187
_3717
Shewana3_3718: Shewana3_3718 - DedA family protein (RefSeq), at 4,461,356 to 4,461,967
_3718
Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518
_3719
Position (kb) 4460
4461
4462 Strain fitness (log2 ratio) -1
0
1 at 4459.318 kb on + strand at 4459.373 kb on + strand at 4459.373 kb on + strand at 4459.381 kb on - strand at 4459.381 kb on - strand at 4459.452 kb on - strand at 4459.725 kb on + strand, within Shewana3_3716 at 4459.969 kb on - strand, within Shewana3_3716 at 4461.293 kb on - strand at 4461.552 kb on + strand, within Shewana3_3718 at 4461.673 kb on + strand, within Shewana3_3718 at 4461.714 kb on + strand, within Shewana3_3718 at 4461.714 kb on + strand, within Shewana3_3718 at 4461.722 kb on - strand, within Shewana3_3718 at 4461.976 kb on - strand at 4461.980 kb on + strand at 4461.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 4,459,318 + +0.0 4,459,373 + +0.3 4,459,373 + +0.3 4,459,381 - -1.3 4,459,381 - +0.3 4,459,452 - +1.2 4,459,725 + Shewana3_3716 0.14 +0.3 4,459,969 - Shewana3_3716 0.66 +0.0 4,461,293 - +0.0 4,461,552 + Shewana3_3718 0.32 +0.2 4,461,673 + Shewana3_3718 0.52 +1.0 4,461,714 + Shewana3_3718 0.58 +0.4 4,461,714 + Shewana3_3718 0.58 -0.8 4,461,722 - Shewana3_3718 0.60 +0.1 4,461,976 - -1.0 4,461,980 + +1.5 4,461,990 + -1.2
Or see this region's nucleotide sequence