Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3627

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3626 and Shewana3_3627 are separated by 420 nucleotidesShewana3_3627 and Shewana3_3628 are separated by 272 nucleotidesShewana3_3628 and Shewana3_3629 are separated by 254 nucleotides Shewana3_3626: Shewana3_3626 - hypothetical protein (RefSeq), at 4,353,293 to 4,354,003 _3626 Shewana3_3627: Shewana3_3627 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 4,354,424 to 4,355,866 _3627 Shewana3_3628: Shewana3_3628 - hypothetical protein (RefSeq), at 4,356,139 to 4,356,396 _3628 Shewana3_3629: Shewana3_3629 - hypothetical protein (RefSeq), at 4,356,651 to 4,357,496 _3629 Position (kb) 4354 4355 4356Strain fitness (log2 ratio) -3 -2 -1 0 1at 4353.473 kb on + strand, within Shewana3_3626at 4353.589 kb on + strand, within Shewana3_3626at 4353.597 kb on - strand, within Shewana3_3626at 4353.602 kb on + strand, within Shewana3_3626at 4353.641 kb on - strand, within Shewana3_3626at 4353.669 kb on + strand, within Shewana3_3626at 4353.726 kb on - strand, within Shewana3_3626at 4353.772 kb on - strand, within Shewana3_3626at 4353.801 kb on + strand, within Shewana3_3626at 4353.801 kb on + strand, within Shewana3_3626at 4353.900 kb on - strand, within Shewana3_3626at 4354.052 kb on - strandat 4354.214 kb on + strandat 4354.222 kb on - strandat 4354.227 kb on - strandat 4354.236 kb on + strandat 4354.236 kb on + strandat 4354.244 kb on - strandat 4354.510 kb on - strandat 4354.515 kb on - strandat 4354.586 kb on - strand, within Shewana3_3627at 4354.711 kb on - strand, within Shewana3_3627at 4354.799 kb on - strand, within Shewana3_3627at 4354.809 kb on - strand, within Shewana3_3627at 4354.974 kb on - strand, within Shewana3_3627at 4354.986 kb on + strand, within Shewana3_3627at 4354.986 kb on + strand, within Shewana3_3627at 4355.047 kb on + strand, within Shewana3_3627at 4355.196 kb on - strand, within Shewana3_3627at 4355.227 kb on + strand, within Shewana3_3627at 4355.303 kb on + strand, within Shewana3_3627at 4355.380 kb on - strand, within Shewana3_3627at 4355.517 kb on + strand, within Shewana3_3627at 4355.691 kb on + strand, within Shewana3_3627at 4355.804 kb on + strandat 4355.825 kb on + strandat 4355.874 kb on + strandat 4355.882 kb on - strandat 4355.902 kb on - strandat 4355.994 kb on + strandat 4355.998 kb on - strandat 4356.031 kb on + strandat 4356.129 kb on - strandat 4356.334 kb on + strand, within Shewana3_3628at 4356.381 kb on + strandat 4356.388 kb on - strandat 4356.455 kb on + strandat 4356.461 kb on - strandat 4356.477 kb on + strandat 4356.614 kb on + strandat 4356.816 kb on + strand, within Shewana3_3629at 4356.829 kb on + strand, within Shewana3_3629

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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4,353,473 + Shewana3_3626 0.25 +0.5
4,353,589 + Shewana3_3626 0.42 -0.4
4,353,597 - Shewana3_3626 0.43 -0.2
4,353,602 + Shewana3_3626 0.43 -0.2
4,353,641 - Shewana3_3626 0.49 -0.3
4,353,669 + Shewana3_3626 0.53 -0.5
4,353,726 - Shewana3_3626 0.61 -0.5
4,353,772 - Shewana3_3626 0.67 +0.0
4,353,801 + Shewana3_3626 0.71 -0.3
4,353,801 + Shewana3_3626 0.71 -0.1
4,353,900 - Shewana3_3626 0.85 +0.3
4,354,052 - +0.6
4,354,214 + -0.7
4,354,222 - +0.3
4,354,227 - -0.6
4,354,236 + -0.0
4,354,236 + +0.2
4,354,244 - +0.0
4,354,510 - -0.5
4,354,515 - -1.0
4,354,586 - Shewana3_3627 0.11 -1.0
4,354,711 - Shewana3_3627 0.20 -1.9
4,354,799 - Shewana3_3627 0.26 -0.5
4,354,809 - Shewana3_3627 0.27 -0.4
4,354,974 - Shewana3_3627 0.38 -3.5
4,354,986 + Shewana3_3627 0.39 -1.0
4,354,986 + Shewana3_3627 0.39 -1.3
4,355,047 + Shewana3_3627 0.43 -1.2
4,355,196 - Shewana3_3627 0.53 -1.3
4,355,227 + Shewana3_3627 0.56 -0.6
4,355,303 + Shewana3_3627 0.61 -0.9
4,355,380 - Shewana3_3627 0.66 -1.3
4,355,517 + Shewana3_3627 0.76 -0.4
4,355,691 + Shewana3_3627 0.88 -0.0
4,355,804 + -0.1
4,355,825 + -0.5
4,355,874 + +0.1
4,355,882 - +0.3
4,355,902 - +0.7
4,355,994 + +0.9
4,355,998 - +0.5
4,356,031 + -0.1
4,356,129 - +0.5
4,356,334 + Shewana3_3628 0.76 -0.2
4,356,381 + +1.6
4,356,388 - +0.5
4,356,455 + +0.8
4,356,461 - -2.0
4,356,477 + -0.2
4,356,614 + -2.3
4,356,816 + Shewana3_3629 0.20 +1.0
4,356,829 + Shewana3_3629 0.21 +0.3

Or see this region's nucleotide sequence