Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3626 and Shewana3_3627 are separated by 420 nucleotides Shewana3_3627 and Shewana3_3628 are separated by 272 nucleotides Shewana3_3628 and Shewana3_3629 are separated by 254 nucleotides
Shewana3_3626: Shewana3_3626 - hypothetical protein (RefSeq), at 4,353,293 to 4,354,003
_3626
Shewana3_3627: Shewana3_3627 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 4,354,424 to 4,355,866
_3627
Shewana3_3628: Shewana3_3628 - hypothetical protein (RefSeq), at 4,356,139 to 4,356,396
_3628
Shewana3_3629: Shewana3_3629 - hypothetical protein (RefSeq), at 4,356,651 to 4,357,496
_3629
Position (kb)
4354
4355
4356 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4353.473 kb on + strand, within Shewana3_3626 at 4353.589 kb on + strand, within Shewana3_3626 at 4353.597 kb on - strand, within Shewana3_3626 at 4353.602 kb on + strand, within Shewana3_3626 at 4353.641 kb on - strand, within Shewana3_3626 at 4353.669 kb on + strand, within Shewana3_3626 at 4353.726 kb on - strand, within Shewana3_3626 at 4353.772 kb on - strand, within Shewana3_3626 at 4353.801 kb on + strand, within Shewana3_3626 at 4353.801 kb on + strand, within Shewana3_3626 at 4353.900 kb on - strand, within Shewana3_3626 at 4354.052 kb on - strand at 4354.214 kb on + strand at 4354.222 kb on - strand at 4354.227 kb on - strand at 4354.236 kb on + strand at 4354.236 kb on + strand at 4354.244 kb on - strand at 4354.510 kb on - strand at 4354.515 kb on - strand at 4354.586 kb on - strand, within Shewana3_3627 at 4354.711 kb on - strand, within Shewana3_3627 at 4354.799 kb on - strand, within Shewana3_3627 at 4354.809 kb on - strand, within Shewana3_3627 at 4354.974 kb on - strand, within Shewana3_3627 at 4354.986 kb on + strand, within Shewana3_3627 at 4354.986 kb on + strand, within Shewana3_3627 at 4355.047 kb on + strand, within Shewana3_3627 at 4355.196 kb on - strand, within Shewana3_3627 at 4355.227 kb on + strand, within Shewana3_3627 at 4355.303 kb on + strand, within Shewana3_3627 at 4355.380 kb on - strand, within Shewana3_3627 at 4355.517 kb on + strand, within Shewana3_3627 at 4355.691 kb on + strand, within Shewana3_3627 at 4355.804 kb on + strand at 4355.825 kb on + strand at 4355.874 kb on + strand at 4355.882 kb on - strand at 4355.902 kb on - strand at 4355.994 kb on + strand at 4355.998 kb on - strand at 4356.031 kb on + strand at 4356.129 kb on - strand at 4356.334 kb on + strand, within Shewana3_3628 at 4356.381 kb on + strand at 4356.388 kb on - strand at 4356.455 kb on + strand at 4356.461 kb on - strand at 4356.477 kb on + strand at 4356.614 kb on + strand at 4356.816 kb on + strand, within Shewana3_3629 at 4356.829 kb on + strand, within Shewana3_3629
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 4,353,473 + Shewana3_3626 0.25 +0.5 4,353,589 + Shewana3_3626 0.42 -0.4 4,353,597 - Shewana3_3626 0.43 -0.2 4,353,602 + Shewana3_3626 0.43 -0.2 4,353,641 - Shewana3_3626 0.49 -0.3 4,353,669 + Shewana3_3626 0.53 -0.5 4,353,726 - Shewana3_3626 0.61 -0.5 4,353,772 - Shewana3_3626 0.67 +0.0 4,353,801 + Shewana3_3626 0.71 -0.3 4,353,801 + Shewana3_3626 0.71 -0.1 4,353,900 - Shewana3_3626 0.85 +0.3 4,354,052 - +0.6 4,354,214 + -0.7 4,354,222 - +0.3 4,354,227 - -0.6 4,354,236 + -0.0 4,354,236 + +0.2 4,354,244 - +0.0 4,354,510 - -0.5 4,354,515 - -1.0 4,354,586 - Shewana3_3627 0.11 -1.0 4,354,711 - Shewana3_3627 0.20 -1.9 4,354,799 - Shewana3_3627 0.26 -0.5 4,354,809 - Shewana3_3627 0.27 -0.4 4,354,974 - Shewana3_3627 0.38 -3.5 4,354,986 + Shewana3_3627 0.39 -1.0 4,354,986 + Shewana3_3627 0.39 -1.3 4,355,047 + Shewana3_3627 0.43 -1.2 4,355,196 - Shewana3_3627 0.53 -1.3 4,355,227 + Shewana3_3627 0.56 -0.6 4,355,303 + Shewana3_3627 0.61 -0.9 4,355,380 - Shewana3_3627 0.66 -1.3 4,355,517 + Shewana3_3627 0.76 -0.4 4,355,691 + Shewana3_3627 0.88 -0.0 4,355,804 + -0.1 4,355,825 + -0.5 4,355,874 + +0.1 4,355,882 - +0.3 4,355,902 - +0.7 4,355,994 + +0.9 4,355,998 - +0.5 4,356,031 + -0.1 4,356,129 - +0.5 4,356,334 + Shewana3_3628 0.76 -0.2 4,356,381 + +1.6 4,356,388 - +0.5 4,356,455 + +0.8 4,356,461 - -2.0 4,356,477 + -0.2 4,356,614 + -2.3 4,356,816 + Shewana3_3629 0.20 +1.0 4,356,829 + Shewana3_3629 0.21 +0.3
Or see this region's nucleotide sequence