Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3539 and Shewana3_3540 are separated by 42 nucleotides Shewana3_3540 and Shewana3_3541 are separated by 235 nucleotides
Shewana3_3539: Shewana3_3539 - alkaline phosphatase (RefSeq), at 4,238,106 to 4,239,746
_3539
Shewana3_3540: Shewana3_3540 - peptidoglycan glycosyltransferase (RefSeq), at 4,239,789 to 4,241,285
_3540
Shewana3_3541: Shewana3_3541 - TonB-dependent receptor (RefSeq), at 4,241,521 to 4,243,599
_3541
Position (kb) 4239
4240
4241
4242 Strain fitness (log2 ratio) -2
-1
0
1 at 4238.815 kb on + strand, within Shewana3_3539 at 4238.845 kb on - strand, within Shewana3_3539 at 4238.898 kb on + strand, within Shewana3_3539 at 4238.913 kb on + strand, within Shewana3_3539 at 4238.938 kb on + strand, within Shewana3_3539 at 4238.946 kb on - strand, within Shewana3_3539 at 4238.992 kb on - strand, within Shewana3_3539 at 4239.215 kb on + strand, within Shewana3_3539 at 4239.275 kb on - strand, within Shewana3_3539 at 4239.312 kb on - strand, within Shewana3_3539 at 4239.324 kb on - strand, within Shewana3_3539 at 4239.428 kb on - strand, within Shewana3_3539 at 4239.430 kb on + strand, within Shewana3_3539 at 4239.490 kb on - strand, within Shewana3_3539 at 4239.578 kb on - strand, within Shewana3_3539 at 4239.612 kb on - strand at 4239.715 kb on - strand at 4239.776 kb on - strand at 4239.885 kb on - strand at 4240.039 kb on + strand, within Shewana3_3540 at 4240.039 kb on + strand, within Shewana3_3540 at 4240.042 kb on - strand, within Shewana3_3540 at 4240.047 kb on - strand, within Shewana3_3540 at 4240.047 kb on - strand, within Shewana3_3540 at 4240.047 kb on - strand, within Shewana3_3540 at 4240.047 kb on - strand, within Shewana3_3540 at 4240.213 kb on + strand, within Shewana3_3540 at 4240.265 kb on - strand, within Shewana3_3540 at 4240.417 kb on + strand, within Shewana3_3540 at 4240.417 kb on + strand, within Shewana3_3540 at 4240.425 kb on - strand, within Shewana3_3540 at 4240.425 kb on - strand, within Shewana3_3540 at 4240.530 kb on + strand, within Shewana3_3540 at 4240.708 kb on - strand, within Shewana3_3540 at 4240.800 kb on + strand, within Shewana3_3540 at 4240.808 kb on - strand, within Shewana3_3540 at 4241.229 kb on + strand at 4241.237 kb on - strand at 4241.253 kb on + strand at 4241.540 kb on - strand at 4241.559 kb on + strand at 4241.714 kb on + strand at 4241.746 kb on - strand, within Shewana3_3541 at 4241.746 kb on - strand, within Shewana3_3541 at 4241.746 kb on - strand, within Shewana3_3541 at 4241.746 kb on - strand, within Shewana3_3541 at 4241.756 kb on - strand, within Shewana3_3541 at 4241.911 kb on + strand, within Shewana3_3541 at 4241.978 kb on - strand, within Shewana3_3541 at 4242.160 kb on + strand, within Shewana3_3541 at 4242.184 kb on - strand, within Shewana3_3541 at 4242.273 kb on + strand, within Shewana3_3541
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 4,238,815 + Shewana3_3539 0.43 -1.0 4,238,845 - Shewana3_3539 0.45 -0.3 4,238,898 + Shewana3_3539 0.48 -2.5 4,238,913 + Shewana3_3539 0.49 -0.8 4,238,938 + Shewana3_3539 0.51 -0.2 4,238,946 - Shewana3_3539 0.51 -0.1 4,238,992 - Shewana3_3539 0.54 +0.3 4,239,215 + Shewana3_3539 0.68 -1.6 4,239,275 - Shewana3_3539 0.71 +0.6 4,239,312 - Shewana3_3539 0.73 +0.4 4,239,324 - Shewana3_3539 0.74 +0.3 4,239,428 - Shewana3_3539 0.81 -0.4 4,239,430 + Shewana3_3539 0.81 -0.5 4,239,490 - Shewana3_3539 0.84 -0.6 4,239,578 - Shewana3_3539 0.90 -0.4 4,239,612 - +0.1 4,239,715 - +0.0 4,239,776 - -0.4 4,239,885 - +0.6 4,240,039 + Shewana3_3540 0.17 -0.0 4,240,039 + Shewana3_3540 0.17 +0.2 4,240,042 - Shewana3_3540 0.17 -0.5 4,240,047 - Shewana3_3540 0.17 -0.3 4,240,047 - Shewana3_3540 0.17 +1.0 4,240,047 - Shewana3_3540 0.17 +0.1 4,240,047 - Shewana3_3540 0.17 -0.5 4,240,213 + Shewana3_3540 0.28 +0.0 4,240,265 - Shewana3_3540 0.32 +0.2 4,240,417 + Shewana3_3540 0.42 +0.4 4,240,417 + Shewana3_3540 0.42 +0.1 4,240,425 - Shewana3_3540 0.42 +0.2 4,240,425 - Shewana3_3540 0.42 -0.1 4,240,530 + Shewana3_3540 0.49 +0.6 4,240,708 - Shewana3_3540 0.61 +0.0 4,240,800 + Shewana3_3540 0.68 +0.1 4,240,808 - Shewana3_3540 0.68 -0.3 4,241,229 + -0.2 4,241,237 - -2.2 4,241,253 + +0.6 4,241,540 - +0.0 4,241,559 + -2.1 4,241,714 + -0.8 4,241,746 - Shewana3_3541 0.11 +0.1 4,241,746 - Shewana3_3541 0.11 +0.3 4,241,746 - Shewana3_3541 0.11 -0.0 4,241,746 - Shewana3_3541 0.11 -0.2 4,241,756 - Shewana3_3541 0.11 -0.2 4,241,911 + Shewana3_3541 0.19 -0.3 4,241,978 - Shewana3_3541 0.22 -0.1 4,242,160 + Shewana3_3541 0.31 -0.5 4,242,184 - Shewana3_3541 0.32 -0.5 4,242,273 + Shewana3_3541 0.36 +0.2
Or see this region's nucleotide sequence