Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2994

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2992 and Shewana3_2993 are separated by 118 nucleotidesShewana3_2993 and Shewana3_2994 are separated by 99 nucleotidesShewana3_2994 and Shewana3_2995 are separated by 390 nucleotides Shewana3_2992: Shewana3_2992 - hypothetical protein (RefSeq), at 3,598,110 to 3,598,745 _2992 Shewana3_2993: Shewana3_2993 - amino acid ABC transporter periplasmic protein (RefSeq), at 3,598,864 to 3,599,613 _2993 Shewana3_2994: Shewana3_2994 - hypothetical protein (RefSeq), at 3,599,713 to 3,600,021 _2994 Shewana3_2995: Shewana3_2995 - PfpI family intracellular peptidase (RefSeq), at 3,600,412 to 3,600,972 _2995 Position (kb) 3599 3600 3601Strain fitness (log2 ratio) -3 -2 -1 0 1at 3599.014 kb on + strand, within Shewana3_2993at 3599.015 kb on - strand, within Shewana3_2993at 3599.216 kb on + strand, within Shewana3_2993at 3599.279 kb on - strand, within Shewana3_2993at 3599.488 kb on + strand, within Shewana3_2993at 3599.550 kb on + strandat 3599.558 kb on - strandat 3599.558 kb on - strandat 3599.707 kb on - strandat 3599.833 kb on + strand, within Shewana3_2994at 3600.515 kb on - strand, within Shewana3_2995at 3600.638 kb on + strand, within Shewana3_2995at 3600.667 kb on - strand, within Shewana3_2995at 3600.876 kb on + strand, within Shewana3_2995at 3600.884 kb on - strand, within Shewana3_2995

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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3,599,014 + Shewana3_2993 0.20 -1.4
3,599,015 - Shewana3_2993 0.20 +0.5
3,599,216 + Shewana3_2993 0.47 -0.6
3,599,279 - Shewana3_2993 0.55 +0.2
3,599,488 + Shewana3_2993 0.83 -0.8
3,599,550 + -2.8
3,599,558 - -0.7
3,599,558 - +1.0
3,599,707 - +0.1
3,599,833 + Shewana3_2994 0.39 -1.0
3,600,515 - Shewana3_2995 0.18 +0.2
3,600,638 + Shewana3_2995 0.40 +1.1
3,600,667 - Shewana3_2995 0.45 +0.4
3,600,876 + Shewana3_2995 0.83 -0.4
3,600,884 - Shewana3_2995 0.84 -0.0

Or see this region's nucleotide sequence