Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2912 and Shewana3_2913 are separated by 134 nucleotides Shewana3_2913 and Shewana3_2914 are separated by 1 nucleotides Shewana3_2914 and Shewana3_2915 are separated by 197 nucleotides
Shewana3_2912: Shewana3_2912 - secretion protein HlyD family protein (RefSeq), at 3,487,437 to 3,488,531
_2912
Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565
_2913
Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977
_2914
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Position (kb)
3488
3489
3490 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3487.678 kb on + strand, within Shewana3_2912 at 3487.678 kb on + strand, within Shewana3_2912 at 3487.723 kb on + strand, within Shewana3_2912 at 3487.979 kb on - strand, within Shewana3_2912 at 3488.021 kb on + strand, within Shewana3_2912 at 3488.145 kb on + strand, within Shewana3_2912 at 3488.272 kb on + strand, within Shewana3_2912 at 3488.272 kb on + strand, within Shewana3_2912 at 3488.284 kb on - strand, within Shewana3_2912 at 3488.292 kb on - strand, within Shewana3_2912 at 3488.490 kb on + strand at 3488.498 kb on - strand at 3488.537 kb on + strand at 3488.559 kb on - strand at 3488.564 kb on - strand at 3488.581 kb on + strand at 3488.623 kb on - strand at 3488.640 kb on - strand at 3488.665 kb on - strand at 3488.895 kb on + strand, within Shewana3_2913 at 3488.996 kb on + strand, within Shewana3_2913 at 3489.133 kb on + strand, within Shewana3_2913 at 3489.350 kb on + strand, within Shewana3_2913 at 3489.371 kb on + strand, within Shewana3_2913 at 3489.732 kb on - strand, within Shewana3_2914 at 3489.734 kb on + strand, within Shewana3_2914 at 3490.003 kb on + strand at 3490.011 kb on - strand at 3490.011 kb on - strand at 3490.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 3,487,678 + Shewana3_2912 0.22 -1.4 3,487,678 + Shewana3_2912 0.22 -0.2 3,487,723 + Shewana3_2912 0.26 +1.6 3,487,979 - Shewana3_2912 0.49 -0.3 3,488,021 + Shewana3_2912 0.53 -1.2 3,488,145 + Shewana3_2912 0.65 -2.2 3,488,272 + Shewana3_2912 0.76 +0.0 3,488,272 + Shewana3_2912 0.76 -2.3 3,488,284 - Shewana3_2912 0.77 -0.0 3,488,292 - Shewana3_2912 0.78 +0.4 3,488,490 + -1.4 3,488,498 - -0.0 3,488,537 + -2.0 3,488,559 - -0.1 3,488,564 - -0.7 3,488,581 + -0.4 3,488,623 - -0.7 3,488,640 - -0.6 3,488,665 - +0.4 3,488,895 + Shewana3_2913 0.25 -3.1 3,488,996 + Shewana3_2913 0.37 -2.0 3,489,133 + Shewana3_2913 0.52 +0.4 3,489,350 + Shewana3_2913 0.76 -1.3 3,489,371 + Shewana3_2913 0.78 -1.4 3,489,732 - Shewana3_2914 0.40 -0.5 3,489,734 + Shewana3_2914 0.41 -1.8 3,490,003 + -0.0 3,490,011 - -0.7 3,490,011 - -1.9 3,490,045 - +0.4
Or see this region's nucleotide sequence