Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2886

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2885 and xni are separated by 14 nucleotidesxni and Shewana3_2887 are separated by 110 nucleotides Shewana3_2885: Shewana3_2885 - hypothetical protein (RefSeq), at 3,452,745 to 3,454,100 _2885 Shewana3_2886: xni - exonuclease IX (RefSeq), at 3,454,115 to 3,454,897 xni Shewana3_2887: Shewana3_2887 - hypothetical protein (RefSeq), at 3,455,008 to 3,455,436 _2887 Position (kb) 3454 3455Strain fitness (log2 ratio) -2 -1 0 1 2at 3453.210 kb on - strand, within Shewana3_2885at 3453.367 kb on + strand, within Shewana3_2885at 3453.475 kb on - strand, within Shewana3_2885at 3453.596 kb on - strand, within Shewana3_2885at 3453.840 kb on - strand, within Shewana3_2885at 3454.022 kb on + strandat 3454.147 kb on - strandat 3454.173 kb on + strandat 3454.205 kb on - strand, within xniat 3454.335 kb on - strand, within xniat 3454.362 kb on + strand, within xniat 3454.381 kb on + strand, within xniat 3454.502 kb on + strand, within xniat 3454.510 kb on - strand, within xniat 3454.726 kb on + strand, within xniat 3454.883 kb on - strandat 3455.090 kb on - strandat 3455.128 kb on + strand, within Shewana3_2887at 3455.172 kb on - strand, within Shewana3_2887at 3455.225 kb on + strand, within Shewana3_2887at 3455.640 kb on - strandat 3455.640 kb on - strandat 3455.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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3,453,210 - Shewana3_2885 0.34 +0.2
3,453,367 + Shewana3_2885 0.46 +1.9
3,453,475 - Shewana3_2885 0.54 +1.1
3,453,596 - Shewana3_2885 0.63 -1.1
3,453,840 - Shewana3_2885 0.81 +0.7
3,454,022 + +0.4
3,454,147 - -1.2
3,454,173 + -0.1
3,454,205 - xni Shewana3_2886 0.11 +1.6
3,454,335 - xni Shewana3_2886 0.28 -1.2
3,454,362 + xni Shewana3_2886 0.32 +1.0
3,454,381 + xni Shewana3_2886 0.34 -1.2
3,454,502 + xni Shewana3_2886 0.49 +0.6
3,454,510 - xni Shewana3_2886 0.50 -1.1
3,454,726 + xni Shewana3_2886 0.78 -0.9
3,454,883 - -1.3
3,455,090 - +1.6
3,455,128 + Shewana3_2887 0.28 -0.4
3,455,172 - Shewana3_2887 0.38 -0.0
3,455,225 + Shewana3_2887 0.51 -0.3
3,455,640 - -1.8
3,455,640 - +0.3
3,455,640 - -1.1

Or see this region's nucleotide sequence