Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2702

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2701 and Shewana3_2702 are separated by 12 nucleotidesShewana3_2702 and Shewana3_2703 are separated by 334 nucleotides Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136 _2701 Shewana3_2702: Shewana3_2702 - DeoR family transcriptional regulator (RefSeq), at 3,229,149 to 3,229,934 _2702 Shewana3_2703: Shewana3_2703 - TonB-dependent receptor (RefSeq), at 3,230,269 to 3,233,124 _2703 Position (kb) 3229 3230Strain fitness (log2 ratio) -1 0 1at 3228.175 kb on - strand, within Shewana3_2701at 3229.024 kb on + strandat 3229.032 kb on - strandat 3229.102 kb on - strandat 3229.351 kb on + strand, within Shewana3_2702at 3229.503 kb on + strand, within Shewana3_2702at 3229.927 kb on + strandat 3230.402 kb on - strandat 3230.518 kb on - strandat 3230.660 kb on + strand, within Shewana3_2703at 3230.660 kb on - strand, within Shewana3_2703at 3230.731 kb on - strand, within Shewana3_2703at 3230.731 kb on - strand, within Shewana3_2703at 3230.751 kb on + strand, within Shewana3_2703at 3230.853 kb on - strand, within Shewana3_2703

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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3,228,175 - Shewana3_2701 0.30 +0.1
3,229,024 + +0.0
3,229,032 - +0.6
3,229,102 - -0.9
3,229,351 + Shewana3_2702 0.26 +1.6
3,229,503 + Shewana3_2702 0.45 -1.0
3,229,927 + +0.6
3,230,402 - +0.2
3,230,518 - -1.4
3,230,660 + Shewana3_2703 0.14 +1.3
3,230,660 - Shewana3_2703 0.14 -1.7
3,230,731 - Shewana3_2703 0.16 -0.7
3,230,731 - Shewana3_2703 0.16 -0.7
3,230,751 + Shewana3_2703 0.17 +0.2
3,230,853 - Shewana3_2703 0.20 +0.0

Or see this region's nucleotide sequence