Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2564 and Shewana3_2565 are separated by 160 nucleotides Shewana3_2565 and Shewana3_2566 are separated by 51 nucleotides Shewana3_2566 and Shewana3_2567 are separated by 565 nucleotides
Shewana3_2564: Shewana3_2564 - maf protein (RefSeq), at 3,065,183 to 3,065,770
_2564
Shewana3_2565: Shewana3_2565 - HAD family hydrolase (RefSeq), at 3,065,931 to 3,066,665
_2565
Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706
_2566
Shewana3_2567: Shewana3_2567 - RNAse E (RefSeq), at 3,068,272 to 3,071,568
_2567
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-1
0
1
2 at 3065.720 kb on - strand at 3065.727 kb on + strand at 3065.770 kb on + strand at 3065.778 kb on - strand at 3065.830 kb on - strand at 3065.892 kb on - strand at 3066.031 kb on + strand, within Shewana3_2565 at 3066.065 kb on - strand, within Shewana3_2565 at 3066.156 kb on - strand, within Shewana3_2565 at 3066.222 kb on + strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.335 kb on + strand, within Shewana3_2565 at 3066.671 kb on - strand at 3066.671 kb on - strand at 3066.693 kb on - strand at 3066.810 kb on + strand at 3066.841 kb on + strand, within Shewana3_2566 at 3066.900 kb on + strand, within Shewana3_2566 at 3066.969 kb on - strand, within Shewana3_2566 at 3067.107 kb on - strand, within Shewana3_2566 at 3067.389 kb on + strand, within Shewana3_2566 at 3067.534 kb on - strand, within Shewana3_2566 at 3067.584 kb on - strand, within Shewana3_2566 at 3067.649 kb on - strand at 3067.697 kb on - strand at 3067.697 kb on - strand at 3067.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 3,065,720 - -0.0 3,065,727 + -0.7 3,065,770 + +1.2 3,065,778 - -0.4 3,065,830 - +0.1 3,065,892 - -0.1 3,066,031 + Shewana3_2565 0.14 +0.6 3,066,065 - Shewana3_2565 0.18 +0.3 3,066,156 - Shewana3_2565 0.31 -1.7 3,066,222 + Shewana3_2565 0.40 +0.0 3,066,230 - Shewana3_2565 0.41 +0.2 3,066,230 - Shewana3_2565 0.41 +0.5 3,066,335 + Shewana3_2565 0.55 -1.0 3,066,671 - -0.5 3,066,671 - +0.1 3,066,693 - +2.0 3,066,810 + +1.6 3,066,841 + Shewana3_2566 0.13 +1.6 3,066,900 + Shewana3_2566 0.18 +0.6 3,066,969 - Shewana3_2566 0.25 -1.0 3,067,107 - Shewana3_2566 0.39 -0.4 3,067,389 + Shewana3_2566 0.68 +1.6 3,067,534 - Shewana3_2566 0.83 -1.7 3,067,584 - Shewana3_2566 0.88 +0.0 3,067,649 - -0.4 3,067,697 - -0.7 3,067,697 - +0.0 3,067,708 + -0.4
Or see this region's nucleotide sequence