Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2136 and Shewana3_2137 are separated by 101 nucleotides Shewana3_2137 and Shewana3_2138 are separated by 11 nucleotides Shewana3_2138 and Shewana3_2139 are separated by 55 nucleotides Shewana3_2139 and Shewana3_2140 are separated by 28 nucleotides
Shewana3_2136: Shewana3_2136 - alpha/beta hydrolase fold (RefSeq), at 2,562,280 to 2,563,080
_2136
Shewana3_2137: Shewana3_2137 - hypothetical protein (RefSeq), at 2,563,182 to 2,563,403
_2137
Shewana3_2138: Shewana3_2138 - LexA regulated protein (RefSeq), at 2,563,415 to 2,563,687
_2138
Shewana3_2139: Shewana3_2139 - flavodoxin FldA (RefSeq), at 2,563,743 to 2,564,270
_2139
Shewana3_2140: Shewana3_2140 - hypothetical protein (RefSeq), at 2,564,299 to 2,565,531
_2140
Position (kb)
2563
2564 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2562.812 kb on + strand, within Shewana3_2136 at 2562.943 kb on - strand, within Shewana3_2136 at 2563.153 kb on - strand at 2563.371 kb on - strand, within Shewana3_2137 at 2563.537 kb on + strand, within Shewana3_2138 at 2563.638 kb on + strand, within Shewana3_2138 at 2563.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 2,562,812 + Shewana3_2136 0.66 -0.5 2,562,943 - Shewana3_2136 0.83 +1.3 2,563,153 - +3.2 2,563,371 - Shewana3_2137 0.85 +0.8 2,563,537 + Shewana3_2138 0.45 +2.0 2,563,638 + Shewana3_2138 0.82 +2.2 2,563,710 + +1.1
Or see this region's nucleotide sequence