Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2035

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2034 and Shewana3_2035 are separated by 449 nucleotidesShewana3_2035 and Shewana3_2036 are separated by 2 nucleotides Shewana3_2034: Shewana3_2034 - hypothetical protein (RefSeq), at 2,434,352 to 2,434,672 _2034 Shewana3_2035: Shewana3_2035 - metallo-beta-lactamase superfamily hydrolase (RefSeq), at 2,435,122 to 2,436,213 _2035 Shewana3_2036: Shewana3_2036 - hypothetical protein (RefSeq), at 2,436,216 to 2,436,866 _2036 Position (kb) 2435 2436 2437Strain fitness (log2 ratio) -2 -1 0 1 2at 2434.135 kb on + strandat 2434.199 kb on - strandat 2434.216 kb on + strandat 2434.369 kb on + strandat 2434.605 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.625 kb on + strand, within Shewana3_2034at 2434.633 kb on - strand, within Shewana3_2034at 2434.633 kb on - strand, within Shewana3_2034at 2434.633 kb on - strand, within Shewana3_2034at 2434.633 kb on - strand, within Shewana3_2034at 2434.707 kb on + strandat 2434.727 kb on - strandat 2434.746 kb on - strandat 2434.789 kb on + strandat 2434.811 kb on + strandat 2434.819 kb on + strandat 2434.840 kb on - strandat 2434.840 kb on - strandat 2434.864 kb on + strandat 2434.888 kb on - strandat 2435.233 kb on - strand, within Shewana3_2035at 2435.292 kb on + strand, within Shewana3_2035at 2435.343 kb on - strand, within Shewana3_2035at 2435.459 kb on - strand, within Shewana3_2035at 2435.558 kb on + strand, within Shewana3_2035at 2435.680 kb on + strand, within Shewana3_2035at 2435.701 kb on + strand, within Shewana3_2035at 2435.709 kb on - strand, within Shewana3_2035at 2435.743 kb on - strand, within Shewana3_2035at 2435.989 kb on + strand, within Shewana3_2035at 2435.991 kb on + strand, within Shewana3_2035at 2436.105 kb on + strandat 2436.106 kb on - strandat 2436.343 kb on - strand, within Shewana3_2036at 2436.368 kb on - strand, within Shewana3_2036at 2436.707 kb on - strand, within Shewana3_2036at 2436.728 kb on + strand, within Shewana3_2036at 2436.791 kb on + strand, within Shewana3_2036at 2436.794 kb on - strand, within Shewana3_2036at 2437.094 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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2,434,135 + -0.2
2,434,199 - +1.8
2,434,216 + -0.8
2,434,369 + +1.8
2,434,605 + Shewana3_2034 0.79 +0.8
2,434,625 + Shewana3_2034 0.85 +0.2
2,434,625 + Shewana3_2034 0.85 -0.2
2,434,625 + Shewana3_2034 0.85 +0.7
2,434,625 + Shewana3_2034 0.85 +0.6
2,434,625 + Shewana3_2034 0.85 +0.9
2,434,625 + Shewana3_2034 0.85 +0.2
2,434,625 + Shewana3_2034 0.85 +1.2
2,434,625 + Shewana3_2034 0.85 +0.4
2,434,625 + Shewana3_2034 0.85 +0.1
2,434,625 + Shewana3_2034 0.85 -0.1
2,434,625 + Shewana3_2034 0.85 +1.4
2,434,625 + Shewana3_2034 0.85 -0.8
2,434,625 + Shewana3_2034 0.85 +0.8
2,434,625 + Shewana3_2034 0.85 -1.5
2,434,633 - Shewana3_2034 0.88 +0.8
2,434,633 - Shewana3_2034 0.88 +0.2
2,434,633 - Shewana3_2034 0.88 +1.8
2,434,633 - Shewana3_2034 0.88 +0.8
2,434,707 + +0.2
2,434,727 - +1.8
2,434,746 - +0.8
2,434,789 + -2.4
2,434,811 + +0.2
2,434,819 + +0.2
2,434,840 - +1.8
2,434,840 - +0.2
2,434,864 + -0.8
2,434,888 - -0.5
2,435,233 - Shewana3_2035 0.10 -0.2
2,435,292 + Shewana3_2035 0.16 -0.5
2,435,343 - Shewana3_2035 0.20 -0.2
2,435,459 - Shewana3_2035 0.31 -0.7
2,435,558 + Shewana3_2035 0.40 -0.2
2,435,680 + Shewana3_2035 0.51 -0.5
2,435,701 + Shewana3_2035 0.53 -1.1
2,435,709 - Shewana3_2035 0.54 +1.8
2,435,743 - Shewana3_2035 0.57 -0.2
2,435,989 + Shewana3_2035 0.79 -0.1
2,435,991 + Shewana3_2035 0.80 +1.8
2,436,105 + +1.1
2,436,106 - +1.8
2,436,343 - Shewana3_2036 0.20 -0.5
2,436,368 - Shewana3_2036 0.23 -0.8
2,436,707 - Shewana3_2036 0.75 -1.4
2,436,728 + Shewana3_2036 0.79 -0.2
2,436,791 + Shewana3_2036 0.88 +0.3
2,436,794 - Shewana3_2036 0.89 +0.8
2,437,094 + +0.8

Or see this region's nucleotide sequence