Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2034 and Shewana3_2035 are separated by 449 nucleotides Shewana3_2035 and Shewana3_2036 are separated by 2 nucleotides
Shewana3_2034: Shewana3_2034 - hypothetical protein (RefSeq), at 2,434,352 to 2,434,672
_2034
Shewana3_2035: Shewana3_2035 - metallo-beta-lactamase superfamily hydrolase (RefSeq), at 2,435,122 to 2,436,213
_2035
Shewana3_2036: Shewana3_2036 - hypothetical protein (RefSeq), at 2,436,216 to 2,436,866
_2036
Position (kb)
2435
2436
2437 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2434.135 kb on + strand at 2434.199 kb on - strand at 2434.216 kb on + strand at 2434.369 kb on + strand at 2434.605 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.625 kb on + strand, within Shewana3_2034 at 2434.633 kb on - strand, within Shewana3_2034 at 2434.633 kb on - strand, within Shewana3_2034 at 2434.633 kb on - strand, within Shewana3_2034 at 2434.633 kb on - strand, within Shewana3_2034 at 2434.707 kb on + strand at 2434.727 kb on - strand at 2434.746 kb on - strand at 2434.789 kb on + strand at 2434.811 kb on + strand at 2434.819 kb on + strand at 2434.840 kb on - strand at 2434.840 kb on - strand at 2434.864 kb on + strand at 2434.888 kb on - strand at 2435.233 kb on - strand, within Shewana3_2035 at 2435.292 kb on + strand, within Shewana3_2035 at 2435.343 kb on - strand, within Shewana3_2035 at 2435.459 kb on - strand, within Shewana3_2035 at 2435.558 kb on + strand, within Shewana3_2035 at 2435.680 kb on + strand, within Shewana3_2035 at 2435.701 kb on + strand, within Shewana3_2035 at 2435.709 kb on - strand, within Shewana3_2035 at 2435.743 kb on - strand, within Shewana3_2035 at 2435.989 kb on + strand, within Shewana3_2035 at 2435.991 kb on + strand, within Shewana3_2035 at 2436.105 kb on + strand at 2436.106 kb on - strand at 2436.343 kb on - strand, within Shewana3_2036 at 2436.368 kb on - strand, within Shewana3_2036 at 2436.707 kb on - strand, within Shewana3_2036 at 2436.728 kb on + strand, within Shewana3_2036 at 2436.791 kb on + strand, within Shewana3_2036 at 2436.794 kb on - strand, within Shewana3_2036 at 2437.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 2,434,135 + -0.2 2,434,199 - +1.8 2,434,216 + -0.8 2,434,369 + +1.8 2,434,605 + Shewana3_2034 0.79 +0.8 2,434,625 + Shewana3_2034 0.85 +0.2 2,434,625 + Shewana3_2034 0.85 -0.2 2,434,625 + Shewana3_2034 0.85 +0.7 2,434,625 + Shewana3_2034 0.85 +0.6 2,434,625 + Shewana3_2034 0.85 +0.9 2,434,625 + Shewana3_2034 0.85 +0.2 2,434,625 + Shewana3_2034 0.85 +1.2 2,434,625 + Shewana3_2034 0.85 +0.4 2,434,625 + Shewana3_2034 0.85 +0.1 2,434,625 + Shewana3_2034 0.85 -0.1 2,434,625 + Shewana3_2034 0.85 +1.4 2,434,625 + Shewana3_2034 0.85 -0.8 2,434,625 + Shewana3_2034 0.85 +0.8 2,434,625 + Shewana3_2034 0.85 -1.5 2,434,633 - Shewana3_2034 0.88 +0.8 2,434,633 - Shewana3_2034 0.88 +0.2 2,434,633 - Shewana3_2034 0.88 +1.8 2,434,633 - Shewana3_2034 0.88 +0.8 2,434,707 + +0.2 2,434,727 - +1.8 2,434,746 - +0.8 2,434,789 + -2.4 2,434,811 + +0.2 2,434,819 + +0.2 2,434,840 - +1.8 2,434,840 - +0.2 2,434,864 + -0.8 2,434,888 - -0.5 2,435,233 - Shewana3_2035 0.10 -0.2 2,435,292 + Shewana3_2035 0.16 -0.5 2,435,343 - Shewana3_2035 0.20 -0.2 2,435,459 - Shewana3_2035 0.31 -0.7 2,435,558 + Shewana3_2035 0.40 -0.2 2,435,680 + Shewana3_2035 0.51 -0.5 2,435,701 + Shewana3_2035 0.53 -1.1 2,435,709 - Shewana3_2035 0.54 +1.8 2,435,743 - Shewana3_2035 0.57 -0.2 2,435,989 + Shewana3_2035 0.79 -0.1 2,435,991 + Shewana3_2035 0.80 +1.8 2,436,105 + +1.1 2,436,106 - +1.8 2,436,343 - Shewana3_2036 0.20 -0.5 2,436,368 - Shewana3_2036 0.23 -0.8 2,436,707 - Shewana3_2036 0.75 -1.4 2,436,728 + Shewana3_2036 0.79 -0.2 2,436,791 + Shewana3_2036 0.88 +0.3 2,436,794 - Shewana3_2036 0.89 +0.8 2,437,094 + +0.8
Or see this region's nucleotide sequence