Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1932

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1931 and Shewana3_1932 are separated by 249 nucleotidesShewana3_1932 and Shewana3_1933 are separated by 111 nucleotidesShewana3_1933 and Shewana3_1934 are separated by 30 nucleotides Shewana3_1931: Shewana3_1931 - alpha-glucosidase (RefSeq), at 2,295,393 to 2,297,504 _1931 Shewana3_1932: Shewana3_1932 - hypothetical protein (RefSeq), at 2,297,754 to 2,298,578 _1932 Shewana3_1933: Shewana3_1933 - NUDIX hydrolase (RefSeq), at 2,298,690 to 2,299,220 _1933 Shewana3_1934: Shewana3_1934 - hemolysin III family channel protein (RefSeq), at 2,299,251 to 2,299,934 _1934 Position (kb) 2297 2298 2299Strain fitness (log2 ratio) -1 0 1 2at 2296.833 kb on - strand, within Shewana3_1931at 2296.833 kb on - strand, within Shewana3_1931at 2296.835 kb on + strand, within Shewana3_1931at 2296.843 kb on - strand, within Shewana3_1931at 2297.012 kb on - strand, within Shewana3_1931at 2297.106 kb on - strand, within Shewana3_1931at 2297.208 kb on + strand, within Shewana3_1931at 2297.238 kb on + strand, within Shewana3_1931at 2297.354 kb on + strandat 2297.354 kb on + strandat 2297.388 kb on - strandat 2297.413 kb on - strandat 2297.628 kb on + strandat 2297.636 kb on - strandat 2297.754 kb on + strandat 2297.843 kb on + strand, within Shewana3_1932at 2298.135 kb on - strand, within Shewana3_1932at 2298.192 kb on - strand, within Shewana3_1932at 2298.347 kb on + strand, within Shewana3_1932at 2298.459 kb on + strand, within Shewana3_1932at 2298.472 kb on - strand, within Shewana3_1932at 2298.507 kb on - strandat 2298.612 kb on + strandat 2298.627 kb on + strandat 2298.648 kb on + strandat 2298.844 kb on + strand, within Shewana3_1933at 2298.863 kb on - strand, within Shewana3_1933at 2298.876 kb on - strand, within Shewana3_1933at 2299.361 kb on + strand, within Shewana3_1934at 2299.369 kb on + strand, within Shewana3_1934at 2299.397 kb on + strand, within Shewana3_1934at 2299.442 kb on + strand, within Shewana3_1934

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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2,296,833 - Shewana3_1931 0.68 +0.2
2,296,833 - Shewana3_1931 0.68 +0.0
2,296,835 + Shewana3_1931 0.68 -0.2
2,296,843 - Shewana3_1931 0.69 +1.8
2,297,012 - Shewana3_1931 0.77 -0.8
2,297,106 - Shewana3_1931 0.81 +1.8
2,297,208 + Shewana3_1931 0.86 +1.0
2,297,238 + Shewana3_1931 0.87 +0.8
2,297,354 + +1.1
2,297,354 + +2.1
2,297,388 - +2.1
2,297,413 - +1.8
2,297,628 + +0.4
2,297,636 - +1.8
2,297,754 + -0.5
2,297,843 + Shewana3_1932 0.11 -0.8
2,298,135 - Shewana3_1932 0.46 +1.8
2,298,192 - Shewana3_1932 0.53 -0.2
2,298,347 + Shewana3_1932 0.72 +0.2
2,298,459 + Shewana3_1932 0.85 -1.1
2,298,472 - Shewana3_1932 0.87 +1.8
2,298,507 - +1.8
2,298,612 + -0.5
2,298,627 + -0.8
2,298,648 + +0.2
2,298,844 + Shewana3_1933 0.29 +1.8
2,298,863 - Shewana3_1933 0.33 +1.8
2,298,876 - Shewana3_1933 0.35 +0.8
2,299,361 + Shewana3_1934 0.16 +1.8
2,299,369 + Shewana3_1934 0.17 +0.2
2,299,397 + Shewana3_1934 0.21 +0.8
2,299,442 + Shewana3_1934 0.28 -0.2

Or see this region's nucleotide sequence