Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1931 and Shewana3_1932 are separated by 249 nucleotides Shewana3_1932 and Shewana3_1933 are separated by 111 nucleotides Shewana3_1933 and Shewana3_1934 are separated by 30 nucleotides
Shewana3_1931: Shewana3_1931 - alpha-glucosidase (RefSeq), at 2,295,393 to 2,297,504
_1931
Shewana3_1932: Shewana3_1932 - hypothetical protein (RefSeq), at 2,297,754 to 2,298,578
_1932
Shewana3_1933: Shewana3_1933 - NUDIX hydrolase (RefSeq), at 2,298,690 to 2,299,220
_1933
Shewana3_1934: Shewana3_1934 - hemolysin III family channel protein (RefSeq), at 2,299,251 to 2,299,934
_1934
Position (kb)
2297
2298
2299 Strain fitness (log2 ratio)
-1
0
1
2 at 2296.833 kb on - strand, within Shewana3_1931 at 2296.833 kb on - strand, within Shewana3_1931 at 2296.835 kb on + strand, within Shewana3_1931 at 2296.843 kb on - strand, within Shewana3_1931 at 2297.012 kb on - strand, within Shewana3_1931 at 2297.106 kb on - strand, within Shewana3_1931 at 2297.208 kb on + strand, within Shewana3_1931 at 2297.238 kb on + strand, within Shewana3_1931 at 2297.354 kb on + strand at 2297.354 kb on + strand at 2297.388 kb on - strand at 2297.413 kb on - strand at 2297.628 kb on + strand at 2297.636 kb on - strand at 2297.754 kb on + strand at 2297.843 kb on + strand, within Shewana3_1932 at 2298.135 kb on - strand, within Shewana3_1932 at 2298.192 kb on - strand, within Shewana3_1932 at 2298.347 kb on + strand, within Shewana3_1932 at 2298.459 kb on + strand, within Shewana3_1932 at 2298.472 kb on - strand, within Shewana3_1932 at 2298.507 kb on - strand at 2298.612 kb on + strand at 2298.627 kb on + strand at 2298.648 kb on + strand at 2298.844 kb on + strand, within Shewana3_1933 at 2298.863 kb on - strand, within Shewana3_1933 at 2298.876 kb on - strand, within Shewana3_1933 at 2299.361 kb on + strand, within Shewana3_1934 at 2299.369 kb on + strand, within Shewana3_1934 at 2299.397 kb on + strand, within Shewana3_1934 at 2299.442 kb on + strand, within Shewana3_1934
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 2,296,833 - Shewana3_1931 0.68 +0.2 2,296,833 - Shewana3_1931 0.68 +0.0 2,296,835 + Shewana3_1931 0.68 -0.2 2,296,843 - Shewana3_1931 0.69 +1.8 2,297,012 - Shewana3_1931 0.77 -0.8 2,297,106 - Shewana3_1931 0.81 +1.8 2,297,208 + Shewana3_1931 0.86 +1.0 2,297,238 + Shewana3_1931 0.87 +0.8 2,297,354 + +1.1 2,297,354 + +2.1 2,297,388 - +2.1 2,297,413 - +1.8 2,297,628 + +0.4 2,297,636 - +1.8 2,297,754 + -0.5 2,297,843 + Shewana3_1932 0.11 -0.8 2,298,135 - Shewana3_1932 0.46 +1.8 2,298,192 - Shewana3_1932 0.53 -0.2 2,298,347 + Shewana3_1932 0.72 +0.2 2,298,459 + Shewana3_1932 0.85 -1.1 2,298,472 - Shewana3_1932 0.87 +1.8 2,298,507 - +1.8 2,298,612 + -0.5 2,298,627 + -0.8 2,298,648 + +0.2 2,298,844 + Shewana3_1933 0.29 +1.8 2,298,863 - Shewana3_1933 0.33 +1.8 2,298,876 - Shewana3_1933 0.35 +0.8 2,299,361 + Shewana3_1934 0.16 +1.8 2,299,369 + Shewana3_1934 0.17 +0.2 2,299,397 + Shewana3_1934 0.21 +0.8 2,299,442 + Shewana3_1934 0.28 -0.2
Or see this region's nucleotide sequence