Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1720 and Shewana3_1721 are separated by 80 nucleotides Shewana3_1721 and Shewana3_1722 are separated by 116 nucleotides Shewana3_1722 and Shewana3_1723 are separated by 15 nucleotides
Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914
_1720
Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257
_1721
Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069
_1722
Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434
_1723
Position (kb)
2023
2024
2025
2026 Strain fitness (log2 ratio)
-2
-1
0
1 at 2023.143 kb on + strand, within Shewana3_1720 at 2023.416 kb on + strand, within Shewana3_1720 at 2023.424 kb on - strand, within Shewana3_1720 at 2023.556 kb on + strand, within Shewana3_1720 at 2023.564 kb on - strand, within Shewana3_1720 at 2023.753 kb on + strand, within Shewana3_1720 at 2024.349 kb on - strand, within Shewana3_1721 at 2024.404 kb on - strand, within Shewana3_1721 at 2024.538 kb on - strand, within Shewana3_1721 at 2024.540 kb on + strand, within Shewana3_1721 at 2024.657 kb on + strand, within Shewana3_1721 at 2024.753 kb on - strand, within Shewana3_1721 at 2024.755 kb on + strand, within Shewana3_1721 at 2024.832 kb on + strand, within Shewana3_1721 at 2024.857 kb on + strand, within Shewana3_1721 at 2024.932 kb on + strand, within Shewana3_1721 at 2025.560 kb on + strand, within Shewana3_1722 at 2025.614 kb on + strand, within Shewana3_1722 at 2025.873 kb on + strand, within Shewana3_1722
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 2,023,143 + Shewana3_1720 0.19 +0.9 2,023,416 + Shewana3_1720 0.47 +1.3 2,023,424 - Shewana3_1720 0.48 -0.6 2,023,556 + Shewana3_1720 0.62 -0.3 2,023,564 - Shewana3_1720 0.63 -0.2 2,023,753 + Shewana3_1720 0.83 +0.8 2,024,349 - Shewana3_1721 0.28 -0.9 2,024,404 - Shewana3_1721 0.32 +0.2 2,024,538 - Shewana3_1721 0.43 -0.0 2,024,540 + Shewana3_1721 0.43 +0.8 2,024,657 + Shewana3_1721 0.52 -1.0 2,024,753 - Shewana3_1721 0.60 -1.6 2,024,755 + Shewana3_1721 0.60 -1.6 2,024,832 + Shewana3_1721 0.66 -1.9 2,024,857 + Shewana3_1721 0.68 -1.1 2,024,932 + Shewana3_1721 0.74 -0.6 2,025,560 + Shewana3_1722 0.27 -0.2 2,025,614 + Shewana3_1722 0.34 -1.2 2,025,873 + Shewana3_1722 0.72 -0.2
Or see this region's nucleotide sequence