Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1711

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucA and Shewana3_1711 are separated by 48 nucleotidesShewana3_1711 and sucC are separated by 118 nucleotides Shewana3_1710: sucA - 2-oxoglutarate dehydrogenase E1 component (RefSeq), at 2,012,652 to 2,015,471 sucA Shewana3_1711: Shewana3_1711 - 2-oxoglutarate dehydrogenase E2 component (RefSeq), at 2,015,520 to 2,016,713 _1711 Shewana3_1712: sucC - succinyl-CoA synthetase subunit beta (RefSeq), at 2,016,832 to 2,017,998 sucC Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -1 0 1at 2017.453 kb on + strand, within sucC

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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2,017,453 + sucC Shewana3_1712 0.53 +0.0

Or see this region's nucleotide sequence