Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1521 and Shewana3_1522 overlap by 4 nucleotides Shewana3_1522 and Shewana3_1523 are separated by 189 nucleotides Shewana3_1523 and Shewana3_1524 are separated by 3 nucleotides Shewana3_1524 and Shewana3_1525 overlap by 8 nucleotides
Shewana3_1521: Shewana3_1521 - phosphotransferase domain-containing protein (RefSeq), at 1,772,380 to 1,773,240
_1521
Shewana3_1522: Shewana3_1522 - translation factor SUA5 (RefSeq), at 1,773,237 to 1,773,857
_1522
Shewana3_1523: Shewana3_1523 - condensin subunit ScpA (RefSeq), at 1,774,047 to 1,774,835
_1523
Shewana3_1524: Shewana3_1524 - condensin subunit ScpB (RefSeq), at 1,774,839 to 1,775,435
_1524
Shewana3_1525: Shewana3_1525 - ribosomal large subunit pseudouridine synthase B (RefSeq), at 1,775,428 to 1,776,303
_1525
Position (kb)
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1773.289 kb on + strand at 1773.558 kb on - strand, within Shewana3_1522 at 1773.647 kb on - strand, within Shewana3_1522 at 1773.732 kb on + strand, within Shewana3_1522 at 1773.816 kb on + strand at 1773.967 kb on + strand at 1773.982 kb on + strand at 1773.982 kb on + strand at 1774.003 kb on + strand at 1774.326 kb on - strand, within Shewana3_1523 at 1774.342 kb on - strand, within Shewana3_1523 at 1774.517 kb on + strand, within Shewana3_1523 at 1774.722 kb on + strand, within Shewana3_1523 at 1774.730 kb on - strand, within Shewana3_1523 at 1774.972 kb on - strand, within Shewana3_1524 at 1775.002 kb on - strand, within Shewana3_1524 at 1775.081 kb on + strand, within Shewana3_1524 at 1775.122 kb on + strand, within Shewana3_1524 at 1775.449 kb on + strand at 1775.674 kb on + strand, within Shewana3_1525 at 1775.742 kb on - strand, within Shewana3_1525 at 1775.759 kb on + strand, within Shewana3_1525
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 1,773,289 + +0.3 1,773,558 - Shewana3_1522 0.52 -2.9 1,773,647 - Shewana3_1522 0.66 +1.3 1,773,732 + Shewana3_1522 0.80 +0.5 1,773,816 + -0.2 1,773,967 + +0.1 1,773,982 + +0.4 1,773,982 + -0.2 1,774,003 + -1.2 1,774,326 - Shewana3_1523 0.35 +0.1 1,774,342 - Shewana3_1523 0.37 +0.2 1,774,517 + Shewana3_1523 0.60 -1.2 1,774,722 + Shewana3_1523 0.86 -1.3 1,774,730 - Shewana3_1523 0.87 -1.3 1,774,972 - Shewana3_1524 0.22 +0.7 1,775,002 - Shewana3_1524 0.27 +1.7 1,775,081 + Shewana3_1524 0.41 -0.1 1,775,122 + Shewana3_1524 0.47 -0.3 1,775,449 + -0.3 1,775,674 + Shewana3_1525 0.28 -0.5 1,775,742 - Shewana3_1525 0.36 -1.3 1,775,759 + Shewana3_1525 0.38 -1.0
Or see this region's nucleotide sequence