Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0820 and Shewana3_0821 are separated by 195 nucleotides Shewana3_0821 and Shewana3_0822 are separated by 25 nucleotides Shewana3_0822 and Shewana3_0823 are separated by 231 nucleotides
Shewana3_0820: Shewana3_0820 - SH3 type 3 domain-containing protein (RefSeq), at 951,063 to 951,611
_0820
Shewana3_0821: Shewana3_0821 - phosphate transporter (RefSeq), at 951,807 to 953,096
_0821
Shewana3_0822: Shewana3_0822 - hypothetical protein (RefSeq), at 953,122 to 953,802
_0822
Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545
_0823
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 951.485 kb on - strand, within Shewana3_0820 at 951.526 kb on - strand, within Shewana3_0820 at 951.558 kb on + strand at 951.558 kb on + strand at 951.718 kb on - strand at 951.795 kb on + strand at 951.804 kb on - strand at 953.191 kb on - strand, within Shewana3_0822 at 953.358 kb on - strand, within Shewana3_0822 at 953.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 951,485 - Shewana3_0820 0.77 +0.7 951,526 - Shewana3_0820 0.84 +0.5 951,558 + -0.6 951,558 + +0.8 951,718 - -0.5 951,795 + -0.6 951,804 - -0.5 953,191 - Shewana3_0822 0.10 +1.0 953,358 - Shewana3_0822 0.35 +1.0 953,857 - -1.9
Or see this region's nucleotide sequence