Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0817 and Shewana3_0818 are separated by 876 nucleotides Shewana3_0818 and Shewana3_0819 are separated by 434 nucleotides
Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810
_0817
Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175
_0818
Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 947,610 to 950,804
_0819
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1 at 945.901 kb on - strand at 945.963 kb on - strand at 946.012 kb on + strand at 946.274 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.319 kb on + strand at 946.319 kb on + strand at 946.544 kb on - strand at 946.591 kb on + strand at 946.591 kb on + strand at 946.726 kb on - strand at 946.809 kb on - strand, within Shewana3_0818 at 946.877 kb on + strand, within Shewana3_0818 at 946.877 kb on - strand, within Shewana3_0818 at 946.959 kb on - strand, within Shewana3_0818 at 947.158 kb on - strand at 947.163 kb on + strand at 947.182 kb on - strand at 947.294 kb on - strand at 947.354 kb on + strand at 947.471 kb on + strand at 947.471 kb on + strand at 947.699 kb on + strand at 947.777 kb on - strand at 947.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 945,901 - -0.8 945,963 - -0.6 946,012 + +0.1 946,274 + +0.6 946,299 + -0.1 946,299 + -0.6 946,299 + +0.2 946,319 + +0.3 946,319 + +0.2 946,544 - -1.1 946,591 + +0.1 946,591 + +0.0 946,726 - -1.9 946,809 - Shewana3_0818 0.25 -0.1 946,877 + Shewana3_0818 0.39 -1.1 946,877 - Shewana3_0818 0.39 -0.8 946,959 - Shewana3_0818 0.56 -1.3 947,158 - -1.7 947,163 + -1.9 947,182 - -0.8 947,294 - +0.4 947,354 + -0.2 947,471 + -0.1 947,471 + -0.6 947,699 + -1.0 947,777 - -0.2 947,842 - +0.4
Or see this region's nucleotide sequence