Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0814

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0813 and Shewana3_0814 are separated by 52 nucleotidesShewana3_0814 and Shewana3_0815 are separated by 30 nucleotides Shewana3_0813: Shewana3_0813 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 940,618 to 942,369 _0813 Shewana3_0814: Shewana3_0814 - putative adenylyl cyclase CyaB (RefSeq), at 942,422 to 943,063 _0814 Shewana3_0815: Shewana3_0815 - IS4 family transposase (RefSeq), at 943,094 to 944,707 _0815 Position (kb) 942 943 944Strain fitness (log2 ratio) -1 0 1at 941.482 kb on + strand, within Shewana3_0813at 941.686 kb on + strand, within Shewana3_0813at 941.871 kb on - strand, within Shewana3_0813at 941.893 kb on - strand, within Shewana3_0813at 942.114 kb on - strand, within Shewana3_0813at 942.260 kb on - strandat 942.316 kb on - strandat 942.318 kb on - strandat 942.424 kb on + strandat 942.432 kb on - strandat 942.583 kb on + strand, within Shewana3_0814at 942.617 kb on + strand, within Shewana3_0814

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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941,482 + Shewana3_0813 0.49 +1.0
941,686 + Shewana3_0813 0.61 +0.1
941,871 - Shewana3_0813 0.72 +0.5
941,893 - Shewana3_0813 0.73 +1.5
942,114 - Shewana3_0813 0.85 -0.6
942,260 - +0.3
942,316 - +0.5
942,318 - +0.0
942,424 + +0.6
942,432 - +0.2
942,583 + Shewana3_0814 0.25 +1.6
942,617 + Shewana3_0814 0.30 +1.2

Or see this region's nucleotide sequence