Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0790 and Shewana3_0791 are separated by 168 nucleotides Shewana3_0791 and Shewana3_0792 are separated by 2 nucleotides Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides
Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546
_0790
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 910.768 kb on - strand at 910.796 kb on - strand at 910.972 kb on - strand at 911.086 kb on + strand, within Shewana3_0790 at 911.099 kb on + strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.242 kb on - strand, within Shewana3_0790 at 911.407 kb on - strand, within Shewana3_0790 at 911.515 kb on + strand at 911.515 kb on + strand at 911.617 kb on - strand at 911.791 kb on + strand at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 912.344 kb on + strand, within Shewana3_0791 at 912.360 kb on + strand, within Shewana3_0791 at 912.841 kb on + strand, within Shewana3_0791 at 912.949 kb on + strand, within Shewana3_0791 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 910,768 - -3.5 910,796 - -1.8 910,972 - -0.3 911,086 + Shewana3_0790 0.28 +0.4 911,099 + Shewana3_0790 0.30 +0.5 911,181 - Shewana3_0790 0.42 -1.6 911,181 - Shewana3_0790 0.42 +0.1 911,242 - Shewana3_0790 0.52 -0.8 911,407 - Shewana3_0790 0.78 -0.4 911,515 + -0.8 911,515 + +0.2 911,617 - +0.2 911,791 + +2.7 911,964 + Shewana3_0791 0.18 +0.9 911,964 + Shewana3_0791 0.18 +3.1 911,964 + Shewana3_0791 0.18 +1.3 912,344 + Shewana3_0791 0.45 +0.5 912,360 + Shewana3_0791 0.46 +0.1 912,841 + Shewana3_0791 0.81 -0.0 912,949 + Shewana3_0791 0.88 +1.0 913,977 + Shewana3_0793 0.37 +0.6 913,995 + Shewana3_0793 0.40 +0.8 913,995 + Shewana3_0793 0.40 -0.0
Or see this region's nucleotide sequence