Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0761 and Shewana3_0762 overlap by 4 nucleotides Shewana3_0762 and Shewana3_0763 overlap by 1 nucleotides Shewana3_0763 and Shewana3_0764 are separated by 400 nucleotides
Shewana3_0761: Shewana3_0761 - hypothetical protein (RefSeq), at 883,024 to 883,980
_0761
Shewana3_0762: Shewana3_0762 - hypothetical protein (RefSeq), at 883,977 to 884,555
_0762
Shewana3_0763: Shewana3_0763 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 884,555 to 885,088
_0763
Shewana3_0764: Shewana3_0764 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 885,489 to 887,351
_0764
Position (kb) 883
884
885 Strain fitness (log2 ratio) -1
0
1 at 883.973 kb on - strand at 884.234 kb on - strand, within Shewana3_0762 at 884.782 kb on - strand, within Shewana3_0763 at 884.830 kb on + strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.868 kb on + strand, within Shewana3_0763 at 884.899 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.972 kb on - strand, within Shewana3_0763 at 884.996 kb on - strand, within Shewana3_0763 at 885.046 kb on + strand at 885.100 kb on - strand at 885.109 kb on - strand at 885.156 kb on - strand at 885.167 kb on + strand at 885.343 kb on + strand at 885.489 kb on + strand at 885.517 kb on + strand at 885.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 883,973 - -0.9 884,234 - Shewana3_0762 0.44 -1.5 884,782 - Shewana3_0763 0.43 +0.4 884,830 + Shewana3_0763 0.51 -1.6 884,838 - Shewana3_0763 0.53 -0.8 884,838 - Shewana3_0763 0.53 +0.2 884,838 - Shewana3_0763 0.53 -0.9 884,868 + Shewana3_0763 0.59 -0.8 884,899 + Shewana3_0763 0.64 +0.0 884,964 + Shewana3_0763 0.77 -0.4 884,964 + Shewana3_0763 0.77 -0.5 884,972 - Shewana3_0763 0.78 +0.0 884,996 - Shewana3_0763 0.83 +0.1 885,046 + -0.6 885,100 - +0.6 885,109 - -0.0 885,156 - -1.0 885,167 + +1.5 885,343 + +0.0 885,489 + +0.3 885,517 + -0.6 885,517 + -0.3
Or see this region's nucleotide sequence