Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0666 and Shewana3_0667 are separated by 74 nucleotides Shewana3_0667 and Shewana3_0668 are separated by 212 nucleotides Shewana3_0668 and Shewana3_0669 overlap by 14 nucleotides
Shewana3_0666: Shewana3_0666 - molybdate ABC transporter periplasmic molybdate-binding protein (RefSeq), at 787,610 to 788,437
_0666
Shewana3_0667: Shewana3_0667 - magnesium transporter (RefSeq), at 788,512 to 789,876
_0667
Shewana3_0668: Shewana3_0668 - HPr family phosphocarrier protein (RefSeq), at 790,089 to 790,364
_0668
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 787.696 kb on + strand, within Shewana3_0666 at 787.707 kb on + strand, within Shewana3_0666 at 787.712 kb on - strand, within Shewana3_0666 at 787.731 kb on + strand, within Shewana3_0666 at 787.888 kb on + strand, within Shewana3_0666 at 787.896 kb on - strand, within Shewana3_0666 at 787.942 kb on + strand, within Shewana3_0666 at 787.970 kb on + strand, within Shewana3_0666 at 787.996 kb on - strand, within Shewana3_0666 at 788.165 kb on - strand, within Shewana3_0666 at 788.190 kb on - strand, within Shewana3_0666 at 788.316 kb on + strand, within Shewana3_0666 at 788.423 kb on - strand at 788.499 kb on + strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.591 kb on - strand at 788.596 kb on - strand at 788.757 kb on + strand, within Shewana3_0667 at 788.895 kb on + strand, within Shewana3_0667 at 788.988 kb on + strand, within Shewana3_0667 at 789.021 kb on - strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.430 kb on + strand, within Shewana3_0667 at 789.563 kb on + strand, within Shewana3_0667 at 789.600 kb on - strand, within Shewana3_0667 at 789.653 kb on + strand, within Shewana3_0667 at 789.680 kb on + strand, within Shewana3_0667 at 789.684 kb on + strand, within Shewana3_0667 at 789.864 kb on - strand at 789.956 kb on + strand at 790.066 kb on + strand at 790.180 kb on + strand, within Shewana3_0668 at 790.180 kb on - strand, within Shewana3_0668 at 790.282 kb on - strand, within Shewana3_0668
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 787,696 + Shewana3_0666 0.10 -0.5 787,707 + Shewana3_0666 0.12 +1.2 787,712 - Shewana3_0666 0.12 -0.3 787,731 + Shewana3_0666 0.15 -0.8 787,888 + Shewana3_0666 0.34 +0.1 787,896 - Shewana3_0666 0.35 -1.0 787,942 + Shewana3_0666 0.40 +0.9 787,970 + Shewana3_0666 0.43 +1.2 787,996 - Shewana3_0666 0.47 -0.8 788,165 - Shewana3_0666 0.67 -0.8 788,190 - Shewana3_0666 0.70 -0.1 788,316 + Shewana3_0666 0.85 -0.4 788,423 - -0.4 788,499 + -1.1 788,507 - +0.0 788,507 - -0.1 788,507 - -0.2 788,507 - +0.4 788,507 - -0.0 788,507 - -0.8 788,591 - +0.2 788,596 - -1.3 788,757 + Shewana3_0667 0.18 -0.6 788,895 + Shewana3_0667 0.28 -1.4 788,988 + Shewana3_0667 0.35 -0.3 789,021 - Shewana3_0667 0.37 -1.3 789,025 + Shewana3_0667 0.38 +3.1 789,025 + Shewana3_0667 0.38 -1.6 789,430 + Shewana3_0667 0.67 -0.6 789,563 + Shewana3_0667 0.77 -1.9 789,600 - Shewana3_0667 0.80 -2.1 789,653 + Shewana3_0667 0.84 -1.8 789,680 + Shewana3_0667 0.86 +1.1 789,684 + Shewana3_0667 0.86 -2.4 789,864 - -0.3 789,956 + -1.2 790,066 + -0.5 790,180 + Shewana3_0668 0.33 -0.6 790,180 - Shewana3_0668 0.33 -2.5 790,282 - Shewana3_0668 0.70 -0.1
Or see this region's nucleotide sequence