Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0650 and Shewana3_0651 are separated by 586 nucleotides Shewana3_0651 and Shewana3_0652 are separated by 558 nucleotides
Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937
_0650
Shewana3_0651: Shewana3_0651 - hypothetical protein (RefSeq), at 770,524 to 770,958
_0651
Shewana3_0652: Shewana3_0652 - aspartate kinase III (RefSeq), at 771,517 to 772,872
_0652
Position (kb) 770
771 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 769.538 kb on - strand, within Shewana3_0650 at 769.580 kb on - strand, within Shewana3_0650 at 769.589 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 770.232 kb on - strand at 770.267 kb on + strand at 770.349 kb on + strand at 770.397 kb on + strand at 770.496 kb on - strand at 770.636 kb on + strand, within Shewana3_0651 at 770.646 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.917 kb on + strand at 770.997 kb on - strand at 771.004 kb on + strand at 771.248 kb on + strand at 771.279 kb on - strand at 771.400 kb on - strand at 771.498 kb on - strand at 771.568 kb on + strand at 771.658 kb on + strand, within Shewana3_0652 at 771.744 kb on - strand, within Shewana3_0652 at 771.853 kb on - strand, within Shewana3_0652 at 771.876 kb on + strand, within Shewana3_0652 at 771.949 kb on + strand, within Shewana3_0652
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 769,538 - Shewana3_0650 0.44 +4.9 769,580 - Shewana3_0650 0.50 +5.7 769,589 - Shewana3_0650 0.51 +3.9 769,821 - Shewana3_0650 0.84 +5.5 769,821 - Shewana3_0650 0.84 +5.5 769,821 - Shewana3_0650 0.84 +6.0 769,842 - Shewana3_0650 0.87 +4.8 769,842 - Shewana3_0650 0.87 +4.4 770,232 - +3.3 770,267 + +1.5 770,349 + +0.8 770,397 + -2.5 770,496 - -0.2 770,636 + Shewana3_0651 0.26 -0.8 770,646 + Shewana3_0651 0.28 -0.0 770,897 + Shewana3_0651 0.86 +0.1 770,897 + Shewana3_0651 0.86 -0.7 770,917 + +0.1 770,997 - -1.1 771,004 + -0.2 771,248 + +0.6 771,279 - -0.5 771,400 - +0.5 771,498 - -1.8 771,568 + +0.1 771,658 + Shewana3_0652 0.10 -0.4 771,744 - Shewana3_0652 0.17 -0.1 771,853 - Shewana3_0652 0.25 +1.3 771,876 + Shewana3_0652 0.26 +0.1 771,949 + Shewana3_0652 0.32 +0.2
Or see this region's nucleotide sequence