Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0648 and Shewana3_0649 are separated by 296 nucleotides Shewana3_0649 and Shewana3_0650 are separated by 352 nucleotides
Shewana3_0648: Shewana3_0648 - fructose-1,6-bisphosphatase (RefSeq), at 765,288 to 766,280
_0648
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937
_0650
Position (kb) 766
767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 765.579 kb on - strand, within Shewana3_0648 at 765.628 kb on - strand, within Shewana3_0648 at 765.802 kb on - strand, within Shewana3_0648 at 765.897 kb on - strand, within Shewana3_0648 at 765.979 kb on - strand, within Shewana3_0648 at 766.193 kb on - strand at 766.265 kb on + strand at 766.273 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.450 kb on + strand at 766.552 kb on - strand at 766.712 kb on - strand at 766.712 kb on - strand at 766.880 kb on - strand, within Shewana3_0649 at 767.003 kb on + strand, within Shewana3_0649 at 767.016 kb on - strand, within Shewana3_0649 at 767.372 kb on - strand, within Shewana3_0649 at 767.695 kb on - strand, within Shewana3_0649 at 767.871 kb on + strand, within Shewana3_0649 at 767.872 kb on - strand, within Shewana3_0649 at 768.034 kb on - strand, within Shewana3_0649 at 768.034 kb on - strand, within Shewana3_0649 at 768.041 kb on + strand, within Shewana3_0649 at 768.044 kb on - strand, within Shewana3_0649 at 768.060 kb on - strand, within Shewana3_0649 at 768.081 kb on + strand, within Shewana3_0649 at 768.104 kb on + strand, within Shewana3_0649 at 768.154 kb on + strand, within Shewana3_0649 at 768.206 kb on + strand, within Shewana3_0649 at 768.261 kb on + strand, within Shewana3_0649 at 768.274 kb on - strand, within Shewana3_0649 at 768.387 kb on + strand, within Shewana3_0649 at 768.683 kb on + strand at 768.729 kb on - strand at 768.829 kb on + strand at 768.883 kb on + strand at 768.920 kb on + strand at 768.922 kb on + strand at 768.945 kb on - strand at 768.966 kb on + strand at 768.973 kb on + strand at 769.016 kb on - strand at 769.084 kb on + strand at 769.258 kb on - strand at 769.433 kb on - strand, within Shewana3_0650 at 769.433 kb on - strand, within Shewana3_0650 at 769.487 kb on - strand, within Shewana3_0650 at 769.538 kb on - strand, within Shewana3_0650 at 769.580 kb on - strand, within Shewana3_0650 at 769.589 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 765,579 - Shewana3_0648 0.29 +0.0 765,628 - Shewana3_0648 0.34 -0.3 765,802 - Shewana3_0648 0.52 -0.8 765,897 - Shewana3_0648 0.61 -1.9 765,979 - Shewana3_0648 0.70 -2.4 766,193 - -1.7 766,265 + -1.4 766,273 - -1.5 766,412 + -0.2 766,412 + +0.3 766,412 + -0.1 766,450 + -0.0 766,552 - -0.1 766,712 - -0.5 766,712 - -0.1 766,880 - Shewana3_0649 0.13 +0.4 767,003 + Shewana3_0649 0.19 +0.5 767,016 - Shewana3_0649 0.19 +0.4 767,372 - Shewana3_0649 0.35 +0.5 767,695 - Shewana3_0649 0.49 -1.0 767,871 + Shewana3_0649 0.56 +0.4 767,872 - Shewana3_0649 0.57 -1.1 768,034 - Shewana3_0649 0.64 -0.4 768,034 - Shewana3_0649 0.64 -1.3 768,041 + Shewana3_0649 0.64 -0.2 768,044 - Shewana3_0649 0.64 +0.3 768,060 - Shewana3_0649 0.65 +0.9 768,081 + Shewana3_0649 0.66 -0.5 768,104 + Shewana3_0649 0.67 +1.2 768,154 + Shewana3_0649 0.69 +0.2 768,206 + Shewana3_0649 0.71 +0.1 768,261 + Shewana3_0649 0.73 +0.7 768,274 - Shewana3_0649 0.74 -0.2 768,387 + Shewana3_0649 0.79 -0.3 768,683 + +0.4 768,729 - -0.2 768,829 + -1.1 768,883 + +0.3 768,920 + +0.4 768,922 + +0.5 768,945 - +0.3 768,966 + -0.3 768,973 + +1.1 769,016 - +0.6 769,084 + -0.2 769,258 - +4.5 769,433 - Shewana3_0650 0.30 +5.3 769,433 - Shewana3_0650 0.30 +5.1 769,487 - Shewana3_0650 0.37 +5.4 769,538 - Shewana3_0650 0.44 +4.9 769,580 - Shewana3_0650 0.50 +5.7 769,589 - Shewana3_0650 0.51 +3.9 769,821 - Shewana3_0650 0.84 +5.5 769,821 - Shewana3_0650 0.84 +5.5 769,821 - Shewana3_0650 0.84 +6.0 769,842 - Shewana3_0650 0.87 +4.8 769,842 - Shewana3_0650 0.87 +4.4
Or see this region's nucleotide sequence