Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0606 and Shewana3_0607 are separated by 455 nucleotides Shewana3_0607 and Shewana3_0608 are separated by 199 nucleotides
Shewana3_0606: Shewana3_0606 - aminodeoxychorismate synthase, glutamine amidotransferase subunit (RefSeq), at 708,744 to 709,319
_0606
Shewana3_0607: Shewana3_0607 - peptidase S9 prolyl oligopeptidase (RefSeq), at 709,775 to 712,255
_0607
Shewana3_0608: Shewana3_0608 - putative signal transduction protein (RefSeq), at 712,455 to 713,600
_0608
Position (kb) 709
710
711
712
713 Strain fitness (log2 ratio) -2
-1
0
1 at 708.810 kb on + strand, within Shewana3_0606 at 708.900 kb on - strand, within Shewana3_0606 at 709.085 kb on + strand, within Shewana3_0606 at 709.343 kb on + strand at 709.351 kb on - strand at 709.499 kb on + strand at 709.757 kb on + strand at 709.886 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.948 kb on + strand at 710.075 kb on - strand, within Shewana3_0607 at 710.135 kb on + strand, within Shewana3_0607 at 710.143 kb on - strand, within Shewana3_0607 at 710.153 kb on - strand, within Shewana3_0607 at 710.300 kb on - strand, within Shewana3_0607 at 710.410 kb on + strand, within Shewana3_0607 at 710.542 kb on + strand, within Shewana3_0607 at 710.769 kb on + strand, within Shewana3_0607 at 710.803 kb on + strand, within Shewana3_0607 at 710.824 kb on + strand, within Shewana3_0607 at 710.832 kb on - strand, within Shewana3_0607 at 711.099 kb on - strand, within Shewana3_0607 at 711.124 kb on + strand, within Shewana3_0607 at 711.233 kb on + strand, within Shewana3_0607 at 711.241 kb on - strand, within Shewana3_0607 at 711.417 kb on + strand, within Shewana3_0607 at 711.458 kb on - strand, within Shewana3_0607 at 711.687 kb on - strand, within Shewana3_0607 at 711.708 kb on - strand, within Shewana3_0607 at 711.719 kb on + strand, within Shewana3_0607 at 711.792 kb on + strand, within Shewana3_0607 at 711.959 kb on + strand, within Shewana3_0607 at 712.335 kb on + strand at 712.343 kb on - strand at 712.541 kb on + strand at 712.797 kb on - strand, within Shewana3_0608 at 712.838 kb on - strand, within Shewana3_0608 at 713.116 kb on - strand, within Shewana3_0608 at 713.124 kb on + strand, within Shewana3_0608
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 708,810 + Shewana3_0606 0.11 +1.0 708,900 - Shewana3_0606 0.27 +0.0 709,085 + Shewana3_0606 0.59 +0.1 709,343 + -0.5 709,351 - +0.1 709,499 + -0.4 709,757 + -0.8 709,886 + +0.1 709,926 + -1.1 709,926 + -0.4 709,926 + +1.0 709,948 + -0.6 710,075 - Shewana3_0607 0.12 +0.9 710,135 + Shewana3_0607 0.15 +0.0 710,143 - Shewana3_0607 0.15 +0.0 710,153 - Shewana3_0607 0.15 -0.6 710,300 - Shewana3_0607 0.21 -1.5 710,410 + Shewana3_0607 0.26 +0.9 710,542 + Shewana3_0607 0.31 -0.7 710,769 + Shewana3_0607 0.40 +0.9 710,803 + Shewana3_0607 0.41 +0.1 710,824 + Shewana3_0607 0.42 -0.1 710,832 - Shewana3_0607 0.43 -0.5 711,099 - Shewana3_0607 0.53 +0.6 711,124 + Shewana3_0607 0.54 +0.1 711,233 + Shewana3_0607 0.59 +0.2 711,241 - Shewana3_0607 0.59 +0.1 711,417 + Shewana3_0607 0.66 -0.8 711,458 - Shewana3_0607 0.68 +0.1 711,687 - Shewana3_0607 0.77 -0.6 711,708 - Shewana3_0607 0.78 -0.2 711,719 + Shewana3_0607 0.78 -0.2 711,792 + Shewana3_0607 0.81 -0.5 711,959 + Shewana3_0607 0.88 -0.4 712,335 + -2.5 712,343 - +0.4 712,541 + -0.4 712,797 - Shewana3_0608 0.30 -0.2 712,838 - Shewana3_0608 0.33 -0.4 713,116 - Shewana3_0608 0.58 -1.2 713,124 + Shewana3_0608 0.58 +0.2
Or see this region's nucleotide sequence