Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0566 and Shewana3_0567 are separated by 4 nucleotides Shewana3_0567 and Shewana3_0568 are separated by 156 nucleotides Shewana3_0568 and Shewana3_0569 are separated by 43 nucleotides Shewana3_0569 and Shewana3_0570 are separated by 57 nucleotides
Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093
_0566
Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865
_0567
Shewana3_0568: Shewana3_0568 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 661,022 to 661,804
_0568
Shewana3_0569: Shewana3_0569 - hypothetical protein (RefSeq), at 661,848 to 662,255
_0569
Shewana3_0570: Shewana3_0570 - diguanylate cyclase (RefSeq), at 662,313 to 663,287
_0570
Position (kb) 661
662 Strain fitness (log2 ratio) -1
0
1 at 660.052 kb on + strand at 660.052 kb on + strand at 660.052 kb on + strand at 660.060 kb on - strand at 660.235 kb on - strand, within Shewana3_0567 at 660.266 kb on + strand, within Shewana3_0567 at 660.281 kb on - strand, within Shewana3_0567 at 660.450 kb on + strand, within Shewana3_0567 at 660.695 kb on + strand, within Shewana3_0567 at 660.729 kb on + strand, within Shewana3_0567 at 660.775 kb on - strand, within Shewana3_0567 at 660.805 kb on - strand at 660.929 kb on + strand at 661.077 kb on + strand at 661.149 kb on - strand, within Shewana3_0568 at 661.202 kb on + strand, within Shewana3_0568 at 661.303 kb on + strand, within Shewana3_0568 at 661.303 kb on + strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.375 kb on + strand, within Shewana3_0568 at 661.538 kb on - strand, within Shewana3_0568 at 661.563 kb on + strand, within Shewana3_0568 at 661.635 kb on + strand, within Shewana3_0568 at 661.709 kb on + strand, within Shewana3_0568 at 662.345 kb on - strand at 662.390 kb on - strand at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.529 kb on + strand, within Shewana3_0570 at 662.582 kb on - strand, within Shewana3_0570 at 662.627 kb on + strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.801 kb on + strand, within Shewana3_0570
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 660,052 + -0.3 660,052 + +0.1 660,052 + -0.3 660,060 - -0.2 660,235 - Shewana3_0567 0.18 +0.1 660,266 + Shewana3_0567 0.22 -0.0 660,281 - Shewana3_0567 0.24 -0.5 660,450 + Shewana3_0567 0.46 -0.1 660,695 + Shewana3_0567 0.78 -0.2 660,729 + Shewana3_0567 0.82 +0.4 660,775 - Shewana3_0567 0.88 -1.6 660,805 - -0.4 660,929 + -0.3 661,077 + -0.8 661,149 - Shewana3_0568 0.16 +0.3 661,202 + Shewana3_0568 0.23 -1.1 661,303 + Shewana3_0568 0.36 +0.8 661,303 + Shewana3_0568 0.36 -0.2 661,311 - Shewana3_0568 0.37 +0.3 661,311 - Shewana3_0568 0.37 -0.2 661,311 - Shewana3_0568 0.37 +0.2 661,375 + Shewana3_0568 0.45 +0.2 661,538 - Shewana3_0568 0.66 +0.9 661,563 + Shewana3_0568 0.69 -0.7 661,635 + Shewana3_0568 0.78 -0.1 661,709 + Shewana3_0568 0.88 -0.4 662,345 - +0.2 662,390 - -0.0 662,444 + Shewana3_0570 0.13 -0.2 662,444 + Shewana3_0570 0.13 -0.3 662,444 + Shewana3_0570 0.13 +0.1 662,444 + Shewana3_0570 0.13 +0.0 662,444 + Shewana3_0570 0.13 -0.9 662,444 + Shewana3_0570 0.13 +0.9 662,452 - Shewana3_0570 0.14 -0.1 662,452 - Shewana3_0570 0.14 -0.2 662,452 - Shewana3_0570 0.14 -0.2 662,452 - Shewana3_0570 0.14 -0.1 662,529 + Shewana3_0570 0.22 -0.8 662,582 - Shewana3_0570 0.28 -0.4 662,627 + Shewana3_0570 0.32 -0.7 662,707 - Shewana3_0570 0.40 -0.5 662,707 - Shewana3_0570 0.40 +0.2 662,801 + Shewana3_0570 0.50 +0.8
Or see this region's nucleotide sequence