Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0410 and Shewana3_0411 are separated by 0 nucleotides Shewana3_0411 and Shewana3_0412 are separated by 74 nucleotides Shewana3_0412 and Shewana3_0413 are separated by 147 nucleotides
Shewana3_0410: Shewana3_0410 - ATP-dependent RNA helicase RhlB (RefSeq), at 469,247 to 470,566
_0410
Shewana3_0411: Shewana3_0411 - Ppx/GppA phosphatase (RefSeq), at 470,567 to 471,493
_0411
Shewana3_0412: Shewana3_0412 - hypothetical protein (RefSeq), at 471,568 to 472,104
_0412
Shewana3_0413: Shewana3_0413 - mutator MutT protein (RefSeq), at 472,252 to 472,650
_0413
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 469.576 kb on - strand, within Shewana3_0410 at 469.589 kb on - strand, within Shewana3_0410 at 469.662 kb on - strand, within Shewana3_0410 at 469.733 kb on + strand, within Shewana3_0410 at 469.811 kb on + strand, within Shewana3_0410 at 470.059 kb on + strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.197 kb on + strand, within Shewana3_0410 at 470.362 kb on + strand, within Shewana3_0410 at 470.385 kb on - strand, within Shewana3_0410 at 470.497 kb on - strand at 470.498 kb on - strand at 470.687 kb on + strand, within Shewana3_0411 at 470.779 kb on + strand, within Shewana3_0411 at 470.787 kb on - strand, within Shewana3_0411 at 470.830 kb on - strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.870 kb on - strand, within Shewana3_0411 at 470.989 kb on + strand, within Shewana3_0411 at 471.041 kb on + strand, within Shewana3_0411 at 471.055 kb on - strand, within Shewana3_0411 at 471.139 kb on + strand, within Shewana3_0411 at 471.140 kb on + strand, within Shewana3_0411 at 471.163 kb on + strand, within Shewana3_0411 at 471.261 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.528 kb on + strand at 471.529 kb on + strand at 471.553 kb on - strand at 471.725 kb on + strand, within Shewana3_0412 at 471.969 kb on + strand, within Shewana3_0412 at 472.172 kb on - strand at 472.445 kb on - strand, within Shewana3_0413
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 469,576 - Shewana3_0410 0.25 +3.4 469,589 - Shewana3_0410 0.26 +2.2 469,662 - Shewana3_0410 0.31 +1.7 469,733 + Shewana3_0410 0.37 +2.4 469,811 + Shewana3_0410 0.43 +1.8 470,059 + Shewana3_0410 0.62 +1.4 470,067 - Shewana3_0410 0.62 -0.5 470,067 - Shewana3_0410 0.62 +4.1 470,197 + Shewana3_0410 0.72 +2.0 470,362 + Shewana3_0410 0.84 +1.8 470,385 - Shewana3_0410 0.86 +1.6 470,497 - +0.8 470,498 - +1.7 470,687 + Shewana3_0411 0.13 +1.3 470,779 + Shewana3_0411 0.23 +2.0 470,787 - Shewana3_0411 0.24 +0.8 470,830 - Shewana3_0411 0.28 +1.5 470,834 + Shewana3_0411 0.29 +1.7 470,834 + Shewana3_0411 0.29 +1.4 470,870 - Shewana3_0411 0.33 +0.9 470,989 + Shewana3_0411 0.46 +1.2 471,041 + Shewana3_0411 0.51 +1.8 471,055 - Shewana3_0411 0.53 +1.3 471,139 + Shewana3_0411 0.62 +1.5 471,140 + Shewana3_0411 0.62 +1.0 471,163 + Shewana3_0411 0.64 +1.5 471,261 + Shewana3_0411 0.75 +1.3 471,280 + Shewana3_0411 0.77 +1.4 471,280 + Shewana3_0411 0.77 +1.2 471,528 + -0.7 471,529 + -0.4 471,553 - -0.3 471,725 + Shewana3_0412 0.29 +1.3 471,969 + Shewana3_0412 0.75 -0.4 472,172 - -0.9 472,445 - Shewana3_0413 0.48 -0.6
Or see this region's nucleotide sequence