Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and Shewana3_0409 are separated by 211 nucleotides Shewana3_0409 and Shewana3_0410 are separated by 152 nucleotides Shewana3_0410 and Shewana3_0411 are separated by 0 nucleotides
Shewana3_0408: rho - transcription termination factor Rho (RefSeq), at 467,291 to 468,556
rho
Shewana3_0409: Shewana3_0409 - thioredoxin (RefSeq), at 468,768 to 469,094
_0409
Shewana3_0410: Shewana3_0410 - ATP-dependent RNA helicase RhlB (RefSeq), at 469,247 to 470,566
_0410
Shewana3_0411: Shewana3_0411 - Ppx/GppA phosphatase (RefSeq), at 470,567 to 471,493
_0411
Position (kb) 469
470
471 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 468.802 kb on + strand, within Shewana3_0409 at 468.913 kb on + strand, within Shewana3_0409 at 468.956 kb on - strand, within Shewana3_0409 at 469.000 kb on - strand, within Shewana3_0409 at 469.370 kb on + strand at 469.576 kb on - strand, within Shewana3_0410 at 469.589 kb on - strand, within Shewana3_0410 at 469.662 kb on - strand, within Shewana3_0410 at 469.733 kb on + strand, within Shewana3_0410 at 469.811 kb on + strand, within Shewana3_0410 at 470.059 kb on + strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.197 kb on + strand, within Shewana3_0410 at 470.362 kb on + strand, within Shewana3_0410 at 470.385 kb on - strand, within Shewana3_0410 at 470.497 kb on - strand at 470.498 kb on - strand at 470.687 kb on + strand, within Shewana3_0411 at 470.779 kb on + strand, within Shewana3_0411 at 470.787 kb on - strand, within Shewana3_0411 at 470.830 kb on - strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.870 kb on - strand, within Shewana3_0411 at 470.989 kb on + strand, within Shewana3_0411 at 471.041 kb on + strand, within Shewana3_0411 at 471.055 kb on - strand, within Shewana3_0411 at 471.139 kb on + strand, within Shewana3_0411 at 471.140 kb on + strand, within Shewana3_0411 at 471.163 kb on + strand, within Shewana3_0411 at 471.261 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.528 kb on + strand at 471.529 kb on + strand at 471.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 468,802 + Shewana3_0409 0.10 +1.0 468,913 + Shewana3_0409 0.44 -1.0 468,956 - Shewana3_0409 0.57 -0.7 469,000 - Shewana3_0409 0.71 -1.0 469,370 + +2.0 469,576 - Shewana3_0410 0.25 +3.4 469,589 - Shewana3_0410 0.26 +2.2 469,662 - Shewana3_0410 0.31 +1.7 469,733 + Shewana3_0410 0.37 +2.4 469,811 + Shewana3_0410 0.43 +1.8 470,059 + Shewana3_0410 0.62 +1.4 470,067 - Shewana3_0410 0.62 -0.5 470,067 - Shewana3_0410 0.62 +4.1 470,197 + Shewana3_0410 0.72 +2.0 470,362 + Shewana3_0410 0.84 +1.8 470,385 - Shewana3_0410 0.86 +1.6 470,497 - +0.8 470,498 - +1.7 470,687 + Shewana3_0411 0.13 +1.3 470,779 + Shewana3_0411 0.23 +2.0 470,787 - Shewana3_0411 0.24 +0.8 470,830 - Shewana3_0411 0.28 +1.5 470,834 + Shewana3_0411 0.29 +1.7 470,834 + Shewana3_0411 0.29 +1.4 470,870 - Shewana3_0411 0.33 +0.9 470,989 + Shewana3_0411 0.46 +1.2 471,041 + Shewana3_0411 0.51 +1.8 471,055 - Shewana3_0411 0.53 +1.3 471,139 + Shewana3_0411 0.62 +1.5 471,140 + Shewana3_0411 0.62 +1.0 471,163 + Shewana3_0411 0.64 +1.5 471,261 + Shewana3_0411 0.75 +1.3 471,280 + Shewana3_0411 0.77 +1.4 471,280 + Shewana3_0411 0.77 +1.2 471,528 + -0.7 471,529 + -0.4 471,553 - -0.3
Or see this region's nucleotide sequence