Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moaA and moaC are separated by 112 nucleotides moaC and Shewana3_0276 are separated by 19 nucleotides Shewana3_0276 and Shewana3_0277 are separated by 1 nucleotides Shewana3_0277 and Shewana3_0278 are separated by 39 nucleotides
Shewana3_0274: moaA - molybdenum cofactor biosynthesis protein A (RefSeq), at 309,765 to 310,778
moaA
Shewana3_0275: moaC - molybdenum cofactor biosynthesis protein C (RefSeq), at 310,891 to 311,370
moaC
Shewana3_0276: Shewana3_0276 - molybdopterin synthase subunit MoaD (RefSeq), at 311,390 to 311,641
_0276
Shewana3_0277: Shewana3_0277 - molybdopterin synthase subunit MoaE (RefSeq), at 311,643 to 312,110
_0277
Shewana3_0278: Shewana3_0278 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 312,150 to 312,953
_0278
Position (kb) 311
312 Strain fitness (log2 ratio) -1
0
1 at 310.402 kb on - strand, within moaA at 310.496 kb on - strand, within moaA at 310.554 kb on - strand, within moaA at 310.573 kb on - strand, within moaA at 310.709 kb on + strand at 310.893 kb on - strand at 310.931 kb on - strand at 311.113 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.355 kb on + strand at 311.355 kb on + strand at 311.363 kb on - strand at 311.528 kb on + strand, within Shewana3_0276 at 311.680 kb on + strand at 311.784 kb on - strand, within Shewana3_0277 at 311.798 kb on - strand, within Shewana3_0277 at 311.805 kb on - strand, within Shewana3_0277 at 311.821 kb on - strand, within Shewana3_0277 at 311.881 kb on - strand, within Shewana3_0277 at 311.950 kb on - strand, within Shewana3_0277 at 312.041 kb on + strand, within Shewana3_0277 at 312.105 kb on + strand at 312.214 kb on + strand at 312.222 kb on - strand at 312.252 kb on - strand, within Shewana3_0278 at 312.283 kb on + strand, within Shewana3_0278 at 312.519 kb on + strand, within Shewana3_0278 at 312.527 kb on - strand, within Shewana3_0278 at 312.606 kb on - strand, within Shewana3_0278 at 312.606 kb on - strand, within Shewana3_0278
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 310,402 - moaA Shewana3_0274 0.63 +1.1 310,496 - moaA Shewana3_0274 0.72 +0.7 310,554 - moaA Shewana3_0274 0.78 -0.2 310,573 - moaA Shewana3_0274 0.80 -0.2 310,709 + +1.7 310,893 - +1.2 310,931 - +0.0 311,113 + moaC Shewana3_0275 0.46 +1.0 311,189 + moaC Shewana3_0275 0.62 +1.6 311,189 + moaC Shewana3_0275 0.62 +0.9 311,189 + moaC Shewana3_0275 0.62 -0.4 311,189 + moaC Shewana3_0275 0.62 +0.3 311,197 - moaC Shewana3_0275 0.64 +0.4 311,197 - moaC Shewana3_0275 0.64 +0.6 311,197 - moaC Shewana3_0275 0.64 +1.1 311,197 - moaC Shewana3_0275 0.64 -0.7 311,280 + moaC Shewana3_0275 0.81 +0.5 311,280 + moaC Shewana3_0275 0.81 +0.7 311,280 + moaC Shewana3_0275 0.81 +1.2 311,280 + moaC Shewana3_0275 0.81 +0.7 311,280 + moaC Shewana3_0275 0.81 +0.5 311,280 + moaC Shewana3_0275 0.81 +1.5 311,280 + moaC Shewana3_0275 0.81 +0.9 311,280 + moaC Shewana3_0275 0.81 +0.6 311,280 + moaC Shewana3_0275 0.81 +0.9 311,288 - moaC Shewana3_0275 0.83 +0.7 311,288 - moaC Shewana3_0275 0.83 -0.1 311,288 - moaC Shewana3_0275 0.83 -0.1 311,288 - moaC Shewana3_0275 0.83 -0.5 311,355 + -0.8 311,355 + -0.3 311,363 - -0.1 311,528 + Shewana3_0276 0.55 +0.8 311,680 + +1.4 311,784 - Shewana3_0277 0.30 +0.3 311,798 - Shewana3_0277 0.33 +0.9 311,805 - Shewana3_0277 0.35 +0.3 311,821 - Shewana3_0277 0.38 +0.5 311,881 - Shewana3_0277 0.51 +0.7 311,950 - Shewana3_0277 0.66 -1.2 312,041 + Shewana3_0277 0.85 +1.0 312,105 + +0.2 312,214 + +0.0 312,222 - -0.7 312,252 - Shewana3_0278 0.13 -0.8 312,283 + Shewana3_0278 0.17 -0.2 312,519 + Shewana3_0278 0.46 +0.1 312,527 - Shewana3_0278 0.47 +0.0 312,606 - Shewana3_0278 0.57 -0.5 312,606 - Shewana3_0278 0.57 -1.5
Or see this region's nucleotide sequence