Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0233

Experiment: 5-Hydroxymethylfurfural 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0231 and Shewana3_0232 are separated by 325 nucleotidesShewana3_0232 and Shewana3_0233 are separated by 83 nucleotidesShewana3_0233 and Shewana3_0234 are separated by 399 nucleotides Shewana3_0231: Shewana3_0231 - cytochrome c biogenesis protein CcmA (RefSeq), at 260,229 to 260,879 _0231 Shewana3_0232: Shewana3_0232 - cytochrome c, class I (RefSeq), at 261,205 to 261,504 _0232 Shewana3_0233: Shewana3_0233 - TPR repeat-containing protein (RefSeq), at 261,588 to 262,835 _0233 Shewana3_0234: Shewana3_0234 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 263,235 to 265,214 _0234 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 260.593 kb on + strand, within Shewana3_0231at 260.696 kb on + strand, within Shewana3_0231at 260.697 kb on - strand, within Shewana3_0231at 260.697 kb on - strand, within Shewana3_0231at 260.700 kb on + strand, within Shewana3_0231at 260.704 kb on - strand, within Shewana3_0231at 260.708 kb on - strand, within Shewana3_0231at 260.708 kb on - strand, within Shewana3_0231at 260.835 kb on - strandat 260.846 kb on + strandat 260.955 kb on - strandat 260.955 kb on - strandat 260.993 kb on + strandat 261.129 kb on + strandat 261.130 kb on + strandat 261.147 kb on - strandat 261.246 kb on - strand, within Shewana3_0232at 261.302 kb on + strand, within Shewana3_0232at 261.302 kb on - strand, within Shewana3_0232at 261.302 kb on - strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.391 kb on + strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.399 kb on - strand, within Shewana3_0232at 261.401 kb on + strand, within Shewana3_0232at 261.401 kb on + strand, within Shewana3_0232at 261.548 kb on - strandat 261.565 kb on + strandat 261.573 kb on - strandat 261.596 kb on - strandat 261.624 kb on - strandat 261.752 kb on + strand, within Shewana3_0233at 261.755 kb on - strand, within Shewana3_0233at 261.824 kb on + strand, within Shewana3_0233at 261.854 kb on - strand, within Shewana3_0233at 261.916 kb on - strand, within Shewana3_0233at 262.012 kb on + strand, within Shewana3_0233at 262.192 kb on + strand, within Shewana3_0233at 262.223 kb on - strand, within Shewana3_0233at 262.223 kb on - strand, within Shewana3_0233at 262.223 kb on - strand, within Shewana3_0233at 262.223 kb on - strand, within Shewana3_0233at 262.223 kb on - strand, within Shewana3_0233at 262.247 kb on - strand, within Shewana3_0233at 262.317 kb on + strand, within Shewana3_0233at 262.402 kb on + strand, within Shewana3_0233at 262.591 kb on - strand, within Shewana3_0233at 262.655 kb on + strand, within Shewana3_0233at 262.702 kb on + strand, within Shewana3_0233at 262.741 kb on - strandat 262.743 kb on - strandat 262.769 kb on + strandat 262.792 kb on - strandat 262.792 kb on - strandat 262.797 kb on - strandat 262.936 kb on + strandat 262.944 kb on - strandat 262.944 kb on - strandat 263.264 kb on + strandat 263.264 kb on + strandat 263.272 kb on - strandat 263.414 kb on - strandat 263.421 kb on + strandat 263.443 kb on + strand, within Shewana3_0234at 263.495 kb on + strand, within Shewana3_0234at 263.514 kb on - strand, within Shewana3_0234at 263.528 kb on - strand, within Shewana3_0234at 263.533 kb on - strand, within Shewana3_0234at 263.724 kb on - strand, within Shewana3_0234at 263.757 kb on + strand, within Shewana3_0234at 263.816 kb on + strand, within Shewana3_0234at 263.828 kb on + strand, within Shewana3_0234

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
remove
260,593 + Shewana3_0231 0.56 +2.2
260,696 + Shewana3_0231 0.72 +3.7
260,697 - Shewana3_0231 0.72 +4.2
260,697 - Shewana3_0231 0.72 +4.8
260,700 + Shewana3_0231 0.72 +3.4
260,704 - Shewana3_0231 0.73 +3.5
260,708 - Shewana3_0231 0.74 +4.0
260,708 - Shewana3_0231 0.74 +4.3
260,835 - +4.7
260,846 + +4.5
260,955 - -0.1
260,955 - -0.6
260,993 + +0.6
261,129 + +0.6
261,130 + +0.4
261,147 - -0.0
261,246 - Shewana3_0232 0.14 +1.2
261,302 + Shewana3_0232 0.32 +1.2
261,302 - Shewana3_0232 0.32 +0.9
261,302 - Shewana3_0232 0.32 +1.5
261,391 + Shewana3_0232 0.62 +1.6
261,391 + Shewana3_0232 0.62 +0.7
261,391 + Shewana3_0232 0.62 +1.7
261,391 + Shewana3_0232 0.62 +1.3
261,391 + Shewana3_0232 0.62 +1.6
261,391 + Shewana3_0232 0.62 +1.3
261,391 + Shewana3_0232 0.62 +1.1
261,391 + Shewana3_0232 0.62 +0.9
261,391 + Shewana3_0232 0.62 +1.5
261,391 + Shewana3_0232 0.62 +1.0
261,399 - Shewana3_0232 0.65 +0.9
261,399 - Shewana3_0232 0.65 +1.8
261,399 - Shewana3_0232 0.65 +1.8
261,399 - Shewana3_0232 0.65 +0.1
261,399 - Shewana3_0232 0.65 +0.8
261,399 - Shewana3_0232 0.65 +2.0
261,399 - Shewana3_0232 0.65 -0.4
261,401 + Shewana3_0232 0.65 +1.1
261,401 + Shewana3_0232 0.65 +1.0
261,548 - -0.3
261,565 + -2.3
261,573 - +0.7
261,596 - -0.2
261,624 - +0.2
261,752 + Shewana3_0233 0.13 +0.5
261,755 - Shewana3_0233 0.13 +0.0
261,824 + Shewana3_0233 0.19 -0.9
261,854 - Shewana3_0233 0.21 -0.2
261,916 - Shewana3_0233 0.26 -0.0
262,012 + Shewana3_0233 0.34 +2.1
262,192 + Shewana3_0233 0.48 -0.6
262,223 - Shewana3_0233 0.51 +0.5
262,223 - Shewana3_0233 0.51 +0.4
262,223 - Shewana3_0233 0.51 +0.8
262,223 - Shewana3_0233 0.51 +0.3
262,223 - Shewana3_0233 0.51 +0.6
262,247 - Shewana3_0233 0.53 -0.1
262,317 + Shewana3_0233 0.58 +1.3
262,402 + Shewana3_0233 0.65 +0.6
262,591 - Shewana3_0233 0.80 +2.7
262,655 + Shewana3_0233 0.85 +3.7
262,702 + Shewana3_0233 0.89 +3.9
262,741 - +3.6
262,743 - +2.9
262,769 + +3.8
262,792 - +4.1
262,792 - +3.7
262,797 - +3.8
262,936 + -0.7
262,944 - +0.3
262,944 - -0.2
263,264 + +3.5
263,264 + +3.5
263,272 - +1.0
263,414 - +3.5
263,421 + +3.8
263,443 + Shewana3_0234 0.11 +3.9
263,495 + Shewana3_0234 0.13 +5.1
263,514 - Shewana3_0234 0.14 +3.5
263,528 - Shewana3_0234 0.15 +3.2
263,533 - Shewana3_0234 0.15 +5.1
263,724 - Shewana3_0234 0.25 +2.7
263,757 + Shewana3_0234 0.26 +4.2
263,816 + Shewana3_0234 0.29 +3.9
263,828 + Shewana3_0234 0.30 +3.4

Or see this region's nucleotide sequence