Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0038

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0037 and Shewana3_0038 are separated by 2 nucleotidesShewana3_0038 and Shewana3_0039 are separated by 122 nucleotidesShewana3_0039 and Shewana3_0040 are separated by 129 nucleotides Shewana3_0037: Shewana3_0037 - DNA protecting protein DprA (RefSeq), at 44,184 to 45,200 _0037 Shewana3_0038: Shewana3_0038 - hypothetical protein (RefSeq), at 45,203 to 45,679 _0038 Shewana3_0039: Shewana3_0039 - DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq), at 45,802 to 46,365 _0039 Shewana3_0040: Shewana3_0040 - translation factor SUA5 (RefSeq), at 46,495 to 47,061 _0040 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 44.258 kb on - strandat 44.261 kb on - strandat 44.319 kb on - strand, within Shewana3_0037at 44.348 kb on + strand, within Shewana3_0037at 44.356 kb on - strand, within Shewana3_0037at 44.410 kb on + strand, within Shewana3_0037at 44.452 kb on + strand, within Shewana3_0037at 44.496 kb on + strand, within Shewana3_0037at 44.504 kb on - strand, within Shewana3_0037at 44.573 kb on - strand, within Shewana3_0037at 44.583 kb on - strand, within Shewana3_0037at 44.614 kb on - strand, within Shewana3_0037at 44.777 kb on + strand, within Shewana3_0037at 44.812 kb on + strand, within Shewana3_0037at 44.919 kb on + strand, within Shewana3_0037at 44.937 kb on - strand, within Shewana3_0037at 45.006 kb on - strand, within Shewana3_0037at 45.182 kb on - strandat 45.375 kb on + strand, within Shewana3_0038at 45.490 kb on + strand, within Shewana3_0038at 45.527 kb on + strand, within Shewana3_0038at 45.652 kb on + strandat 45.660 kb on - strandat 45.660 kb on - strandat 45.830 kb on - strandat 45.867 kb on + strand, within Shewana3_0039at 45.874 kb on + strand, within Shewana3_0039at 45.982 kb on + strand, within Shewana3_0039at 46.005 kb on + strand, within Shewana3_0039at 46.038 kb on + strand, within Shewana3_0039at 46.106 kb on + strand, within Shewana3_0039at 46.122 kb on + strand, within Shewana3_0039at 46.128 kb on + strand, within Shewana3_0039at 46.130 kb on - strand, within Shewana3_0039at 46.137 kb on + strand, within Shewana3_0039at 46.171 kb on - strand, within Shewana3_0039at 46.368 kb on + strandat 46.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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44,258 - -0.3
44,261 - -0.6
44,319 - Shewana3_0037 0.13 +0.1
44,348 + Shewana3_0037 0.16 +0.2
44,356 - Shewana3_0037 0.17 +0.2
44,410 + Shewana3_0037 0.22 +0.2
44,452 + Shewana3_0037 0.26 +0.0
44,496 + Shewana3_0037 0.31 -1.1
44,504 - Shewana3_0037 0.31 -0.0
44,573 - Shewana3_0037 0.38 -0.4
44,583 - Shewana3_0037 0.39 -0.0
44,614 - Shewana3_0037 0.42 -1.2
44,777 + Shewana3_0037 0.58 -0.1
44,812 + Shewana3_0037 0.62 +1.0
44,919 + Shewana3_0037 0.72 +0.1
44,937 - Shewana3_0037 0.74 -0.6
45,006 - Shewana3_0037 0.81 -1.0
45,182 - -1.3
45,375 + Shewana3_0038 0.36 -1.4
45,490 + Shewana3_0038 0.60 -1.6
45,527 + Shewana3_0038 0.68 -0.8
45,652 + -0.4
45,660 - -4.0
45,660 - +0.0
45,830 - -0.3
45,867 + Shewana3_0039 0.12 +0.4
45,874 + Shewana3_0039 0.13 +0.8
45,982 + Shewana3_0039 0.32 -0.0
46,005 + Shewana3_0039 0.36 +0.2
46,038 + Shewana3_0039 0.42 +0.2
46,106 + Shewana3_0039 0.54 -0.4
46,122 + Shewana3_0039 0.57 +0.1
46,128 + Shewana3_0039 0.58 -0.8
46,130 - Shewana3_0039 0.58 -0.5
46,137 + Shewana3_0039 0.59 -0.2
46,171 - Shewana3_0039 0.65 -0.4
46,368 + -0.3
46,409 - -0.6

Or see this region's nucleotide sequence