Strain Fitness in Shewanella loihica PV-4 around Shew_3820

Experiment: Chloramphenicol 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 5 mg/ml
4,547,342	-				-0.4
4,547,342	-				-0.2
4,547,507	+		Shew_3819	0.32	+0.1
4,547,709	-		Shew_3819	0.76	+0.1
4,547,867	-				-0.2
4,547,867	-				-0.5
4,547,867	-				-0.3
4,547,867	-				+0.2
4,547,873	+				-0.3
4,547,879	-				-0.1
4,547,879	-				+0.7
4,547,883	+				-0.1
4,547,883	+				+0.0
4,547,883	+				+0.1
4,547,883	+				-0.7
4,547,883	+				-1.0
4,547,891	-				-0.2
4,548,020	-				+0.2
4,548,030	-				-0.1
4,548,030	-				-0.3
4,548,171	+				+0.4
4,548,174	-				-0.1
4,548,176	+				+0.3
4,548,176	+				+0.1
4,548,176	+				+0.3
4,548,189	-				-0.6
4,548,199	+				-0.1
4,548,465	-		Shew_3820	0.65	+0.4
4,548,522	-		Shew_3820	0.78	+1.1
4,548,580	+				+0.8
4,548,621	-				+0.4
4,548,662	-				-1.0
4,548,664	+				-0.2
4,548,669	+				+0.5
4,548,669	+				+0.1
4,548,672	-				-0.0
4,548,677	-				+0.1
4,548,710	-				-0.2
4,548,811	+				-0.1
4,548,884	+				-0.2
4,548,980	+		Shew_3821	0.11	+0.3
4,548,980	+		Shew_3821	0.11	+0.2
4,548,980	+		Shew_3821	0.11	+0.1
4,548,980	+		Shew_3821	0.11	+0.2
4,548,980	+		Shew_3821	0.11	+0.2
4,548,980	+		Shew_3821	0.11	+0.1
4,548,980	+		Shew_3821	0.11	-0.1
4,548,980	+		Shew_3821	0.11	+0.2
4,548,980	+		Shew_3821	0.11	+0.5
4,548,980	+		Shew_3821	0.11	+0.4
4,548,980	+		Shew_3821	0.11	+0.0
4,548,980	+		Shew_3821	0.11	-0.1
4,548,980	+		Shew_3821	0.11	+0.7
4,548,985	+		Shew_3821	0.11	+0.3
4,548,988	-		Shew_3821	0.12	+0.2
4,548,988	-		Shew_3821	0.12	+0.4
4,548,988	-		Shew_3821	0.12	+0.7
4,548,988	-		Shew_3821	0.12	-0.5
4,548,988	-		Shew_3821	0.12	+1.1
4,548,988	-		Shew_3821	0.12	+1.5
4,548,995	-		Shew_3821	0.12	+1.1
4,548,995	-		Shew_3821	0.12	+0.3
4,548,997	+		Shew_3821	0.12	+0.4
4,549,005	-		Shew_3821	0.12	-1.9
4,549,006	-		Shew_3821	0.12	+0.4
4,549,021	+		Shew_3821	0.13	-0.0
4,549,085	+		Shew_3821	0.15	+0.0
4,549,113	-		Shew_3821	0.16	+0.3
4,549,113	-		Shew_3821	0.16	-0.2
4,549,113	-		Shew_3821	0.16	+0.2
4,549,113	-		Shew_3821	0.16	+0.3
4,549,141	+		Shew_3821	0.17	+0.2
4,549,145	+		Shew_3821	0.18	+0.7
4,549,149	-		Shew_3821	0.18	+0.2
4,549,197	-		Shew_3821	0.20	+0.5
4,549,270	+		Shew_3821	0.22	+0.3
4,549,284	+		Shew_3821	0.23	+0.2
4,549,284	+		Shew_3821	0.23	-0.5
4,549,284	+		Shew_3821	0.23	+0.1
4,549,284	+		Shew_3821	0.23	+0.5
4,549,284	+		Shew_3821	0.23	+0.0
4,549,284	+		Shew_3821	0.23	+0.1
4,549,284	+		Shew_3821	0.23	+1.4
4,549,284	+		Shew_3821	0.23	+0.4
4,549,284	+		Shew_3821	0.23	+0.2
4,549,284	+		Shew_3821	0.23	-0.9
4,549,284	+		Shew_3821	0.23	+0.1
4,549,284	+		Shew_3821	0.23	+0.1
4,549,285	+		Shew_3821	0.23	+0.9
4,549,292	-		Shew_3821	0.23	-0.0
4,549,292	-		Shew_3821	0.23	+0.2
4,549,293	+		Shew_3821	0.23	+0.2
4,549,293	+		Shew_3821	0.23	-0.4
4,549,293	+		Shew_3821	0.23	-0.9
4,549,293	+		Shew_3821	0.23	+0.1
4,549,293	+		Shew_3821	0.23	-0.8
4,549,293	+		Shew_3821	0.23	-0.0
4,549,293	+		Shew_3821	0.23	+0.5
4,549,301	-		Shew_3821	0.24	-0.3
4,549,301	-		Shew_3821	0.24	+0.0
4,549,301	-		Shew_3821	0.24	+0.4
4,549,301	-		Shew_3821	0.24	+0.4
4,549,363	+		Shew_3821	0.26	-0.9
4,549,452	+		Shew_3821	0.29	+1.4
4,549,491	+		Shew_3821	0.31	+0.4
4,549,498	+		Shew_3821	0.31	+0.3
4,549,498	+		Shew_3821	0.31	-0.3
4,549,499	-		Shew_3821	0.31	+0.2
4,549,499	-		Shew_3821	0.31	+0.1
4,549,504	-		Shew_3821	0.31	-0.0
4,549,506	-		Shew_3821	0.31	+0.7
4,549,506	-		Shew_3821	0.31	-0.0
4,549,543	-		Shew_3821	0.33	+0.2
4,549,587	-		Shew_3821	0.35	+0.7
4,549,592	-		Shew_3821	0.35	+0.2
4,549,595	+		Shew_3821	0.35	+0.0
4,549,598	+		Shew_3821	0.35	-0.1