Strain Fitness in Shewanella loihica PV-4 around Shew_3415

Experiment: Chloramphenicol 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 5 mg/ml
4,068,415	+		Shew_3414	0.70	+0.2
4,068,423	-		Shew_3414	0.71	-0.8
4,068,444	-		Shew_3414	0.71	+0.3
4,068,462	+		Shew_3414	0.72	+0.1
4,068,747	+		Shew_3414	0.82	-1.5
4,068,755	-		Shew_3414	0.82	-0.1
4,068,805	-		Shew_3414	0.83	+0.1
4,068,819	+		Shew_3414	0.84	+0.1
4,068,915	+		Shew_3414	0.87	-0.1
4,068,923	-		Shew_3414	0.87	+0.1
4,068,947	-		Shew_3414	0.88	+0.2
4,068,997	-		Shew_3414	0.90	+0.1
4,068,999	+		Shew_3414	0.90	-0.4
4,069,188	-				+0.3
4,069,314	-				+1.3
4,069,314	-				+0.1
4,069,331	+				-0.4
4,069,382	+				+0.2
4,069,461	-				-0.3
4,069,476	-				-0.1
4,069,476	-				-1.4
4,069,503	+		Shew_3415	0.12	-0.9
4,069,511	-		Shew_3415	0.13	+0.1
4,069,511	-		Shew_3415	0.13	-0.1
4,069,522	+		Shew_3415	0.14	-0.4
4,069,593	+		Shew_3415	0.23	-0.2
4,069,857	-		Shew_3415	0.56	-0.3
4,069,858	+		Shew_3415	0.56	-0.7
4,070,004	-		Shew_3415	0.74	-0.0
4,070,077	+		Shew_3415	0.83	+0.3
4,070,178	+				-1.1
4,070,230	-				+0.2
4,070,342	+				+0.3
4,070,383	+				+0.2
4,070,391	-				-0.5
4,071,187	-		Shew_3416	0.34	-0.5